Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B24
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    26   4.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   5.5  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.3  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   7.3  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   9.6  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   9.6  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   9.6  

>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 167 KHKTHSGITSKLYFIKIGS 111
           KHK H+G+ + L  +K+GS
Sbjct: 130 KHKGHAGVVNALDVLKVGS 148


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 248 FNYLFLAPCNNLFHKKRKCTN 310
           F Y  L P NNLFH+  K ++
Sbjct: 612 FIYFSLVPLNNLFHRAYKSSS 632


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +3

Query: 234 MIEMCLITYF*PLAIIYFTKNENVQTRENLQFYY*YRFVYKIGDRVEHVSVELFRIYNS 410
           ++E  L     PL ++  T + N  + EN+      +F Y  G  + ++  ++ R+Y S
Sbjct: 197 VVEFVLTILVLPLTVLILTLSFNSVSSENMFLMMTVQFFYVCG--IPYILFKIIRMYTS 253


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 115 VHSIKSYSNLNDTRRL 68
           +H IK  SN++D RRL
Sbjct: 315 IHEIKKISNISDARRL 330


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 416 HVRIINPEQFNRNVLYPIA 360
           H  I+ PE F+++  YP+A
Sbjct: 430 HAWIVKPESFDKSKKYPVA 448


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 342  RFVYKIGDRVEHV---SVELFRIYNSYMLV 422
            R V  I D   ++   SVE+ R +NSY+LV
Sbjct: 1614 RLVGTISDETSYLRDYSVEILRTFNSYVLV 1643


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 54  EFVNKCVLILFKNKKS 7
           EFVN C+ +L+KN  S
Sbjct: 536 EFVNTCINVLYKNGDS 551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,028
Number of Sequences: 5004
Number of extensions: 39650
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)