Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B23
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   193   9e-51
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   193   9e-51
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    49   4e-07
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   3.8  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   3.8  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    24   8.8  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    24   8.8  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  193 bits (471), Expect = 9e-51
 Identities = 88/132 (66%), Positives = 111/132 (84%)
 Frame = +2

Query: 38  IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 217
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+GV
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 218 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 397
           DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 398 CEPKKFGGPGAR 433
            EPKKFGG GAR
Sbjct: 121 MEPKKFGGHGAR 132


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  193 bits (471), Expect = 9e-51
 Identities = 88/132 (66%), Positives = 111/132 (84%)
 Frame = +2

Query: 38  IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 217
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+GV
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 218 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 397
           DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 398 CEPKKFGGPGAR 433
            EPKKFGG GAR
Sbjct: 121 MEPKKFGGHGAR 132


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 40/125 (32%), Positives = 58/125 (46%)
 Frame = +2

Query: 59  GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 238
           G++K++ A      G G   VNG P D+   R++  K      L    + +  ++  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 239 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 418
           GGG   Q  A+  AISK+LI      + E S K+     V  D   ++ D R+ E KK G
Sbjct: 71  GGGPTGQSGAVHAAISKSLI------LQEPSLKQ-----VIKDTHCVLNDKRKVERKKTG 119

Query: 419 GPGAR 433
            P AR
Sbjct: 120 QPKAR 124


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 123 FTRNTPCPRLQYA-TAVAVFLRPKTCTAWIGS 31
           +T+N PCPR  ++ T       P T  +WI S
Sbjct: 341 YTQNIPCPRAGHSHTYELAPASPNTSISWIQS 372


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 261 TCATCPPPFTVTLISTP 211
           T  +CPPP T+ +++ P
Sbjct: 184 TSTSCPPPTTILIVTVP 200


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 331 RCFVYIFLVESDKGFRDGLSDCINLCNMSTTFYSHSNIH 215
           +C V +  V+ +KG R  LS  I   N+ +T     N H
Sbjct: 318 KCLVSLLFVDGEKGLRSELSQ-IPTENIDSTTDRFDNYH 355


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 307 VESDKGFRDGLSDCINLCNMSTTF 236
           + +D  F   +S  + +CN+STTF
Sbjct: 231 IRNDYPFPQVVSCTVEMCNLSTTF 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,536
Number of Sequences: 5004
Number of extensions: 38978
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)