Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_B23
(434 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 245 4e-65
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 245 4e-65
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 245 4e-65
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 245 4e-65
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 140 2e-33
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 113 2e-25
BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal... 52 1e-06
BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein. 52 1e-06
BC093771-1|AAH93771.1| 1127|Homo sapiens NCK-associated protein ... 32 0.98
BC093769-1|AAH93769.1| 1127|Homo sapiens NCK-associated protein ... 32 0.98
Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex late... 31 1.7
BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for IM... 31 1.7
BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex pr... 31 1.7
BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex pr... 31 1.7
BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein. 31 1.7
AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex pr... 31 1.7
AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex pr... 31 1.7
AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex p... 31 1.7
AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex pr... 31 1.7
AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein pr... 31 1.7
AK024429-1|BAB15719.1| 1430|Homo sapiens FLJ00018 protein protein. 31 1.7
BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for IM... 30 4.0
AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein. 30 4.0
AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein. 30 4.0
BX537652-1|CAD97804.1| 793|Homo sapiens hypothetical protein pr... 29 9.1
BC042613-1|AAH42613.1| 753|Homo sapiens CCDC14 protein protein. 29 9.1
BC040285-1|AAH40285.1| 753|Homo sapiens CCDC14 protein protein. 29 9.1
AL833312-1|CAD91162.1| 455|Homo sapiens hypothetical protein pr... 29 9.1
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 245 bits (600), Expect = 4e-65
Identities = 110/133 (82%), Positives = 129/133 (96%)
Frame = +2
Query: 35 PIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSG 214
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+G
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 215 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 394
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 395 RCEPKKFGGPGAR 433
RCE KKFGGPGAR
Sbjct: 126 RCESKKFGGPGAR 138
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 245 bits (600), Expect = 4e-65
Identities = 110/133 (82%), Positives = 129/133 (96%)
Frame = +2
Query: 35 PIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSG 214
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+G
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 215 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 394
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 395 RCEPKKFGGPGAR 433
RCE KKFGGPGAR
Sbjct: 126 RCESKKFGGPGAR 138
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 245 bits (600), Expect = 4e-65
Identities = 110/133 (82%), Positives = 129/133 (96%)
Frame = +2
Query: 35 PIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSG 214
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+G
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 215 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 394
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 395 RCEPKKFGGPGAR 433
RCE KKFGGPGAR
Sbjct: 126 RCESKKFGGPGAR 138
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 245 bits (600), Expect = 4e-65
Identities = 110/133 (82%), Positives = 129/133 (96%)
Frame = +2
Query: 35 PIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSG 214
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+G
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 215 VDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPR 394
VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPR
Sbjct: 66 VDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPR 125
Query: 395 RCEPKKFGGPGAR 433
RCE KKFGGPGAR
Sbjct: 126 RCESKKFGGPGAR 138
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 140 bits (338), Expect = 2e-33
Identities = 61/83 (73%), Positives = 76/83 (91%)
Frame = +2
Query: 35 PIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSG 214
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+G
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 215 VDIRVTVKGGGHVAQVYAIRQAI 283
VDIRV VKGGGHVAQ+Y Q +
Sbjct: 66 VDIRVRVKGGGHVAQIYGESQEL 88
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 113 bits (273), Expect = 2e-25
Identities = 58/108 (53%), Positives = 76/108 (70%)
Frame = +2
Query: 38 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 217
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL E LLL KE+ +G+
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 218 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 361
DI V VKG GHV Q+YA+ Q ISKAL+ Y KYVDEAS +EIKD L +
Sbjct: 78 DIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEAS-EEIKDTLTR 124
>BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal
protein S9 protein.
Length = 396
Score = 51.6 bits (118), Expect = 1e-06
Identities = 46/126 (36%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Frame = +2
Query: 59 GRKKTATAVAYC-KRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTV 235
G++KTA A A K G G ++VNG L P + Q + Q ++ D+ TV
Sbjct: 274 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 332
Query: 236 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 415
GGG AQ AIR A++KAL +F + DE LL DPR E KK
Sbjct: 333 SGGGRSAQAGAIRLAMAKALCSFVTE--DEVEWMR--------QAGLLTTDPRVRERKKP 382
Query: 416 GGPGAR 433
G GAR
Sbjct: 383 GQEGAR 388
>BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein.
Length = 302
Score = 51.6 bits (118), Expect = 1e-06
Identities = 46/126 (36%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Frame = +2
Query: 59 GRKKTATAVAYC-KRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTV 235
G++KTA A A K G G ++VNG L P + Q + Q ++ D+ TV
Sbjct: 180 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 238
Query: 236 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 415
GGG AQ AIR A++KAL +F + DE LL DPR E KK
Sbjct: 239 SGGGRSAQAGAIRLAMAKALCSFVTE--DEVEWMR--------QAGLLTTDPRVRERKKP 288
Query: 416 GGPGAR 433
G GAR
Sbjct: 289 GQEGAR 294
>BC093771-1|AAH93771.1| 1127|Homo sapiens NCK-associated protein
1-like protein.
Length = 1127
Score = 31.9 bits (69), Expect = 0.98
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 146 EPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 322
+P L K EP L +KF +D+R + + H+ V+ + I + L +YQ +VD
Sbjct: 42 KPPFLLEKSMEPSLKYINKKFPNIDVRNSTQ---HLGPVHREKAEIIRFLTNYYQSFVD 97
>BC093769-1|AAH93769.1| 1127|Homo sapiens NCK-associated protein
1-like protein.
Length = 1127
Score = 31.9 bits (69), Expect = 0.98
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 146 EPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 322
+P L K EP L +KF +D+R + + H+ V+ + I + L +YQ +VD
Sbjct: 42 KPPFLLEKSMEPSLKYINKKFPNIDVRNSTQ---HLGPVHREKAEIIRFLTNYYQSFVD 97
>Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex lateral
element protein protein.
Length = 1530
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 257 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 388
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for
IMAGE:8860302) protein.
Length = 792
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 257 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 388
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 338 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 381
>BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 257 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 388
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 257 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 388
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein.
Length = 1024
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 257 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 388
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 257 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 388
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 257 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 388
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 257 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 388
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 257 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 388
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein
protein.
Length = 520
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 257 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 388
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 61 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 104
>AK024429-1|BAB15719.1| 1430|Homo sapiens FLJ00018 protein protein.
Length = 1430
Score = 31.1 bits (67), Expect = 1.7
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 37 NPSRTSFRP*ENCNCGSILQTRTWSVACKWTPPRPGRTQTSSVQTTGT 180
+PS R E C+CG++ +TRT A PR G ++S+ T G+
Sbjct: 58 SPSLGCGRRGEVCDCGTVCETRTAPAAPTMASPR-GSGSSTSLSTVGS 104
>BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for
IMAGE:6451327) protein.
Length = 204
Score = 29.9 bits (64), Expect = 4.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 326 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 409
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein.
Length = 689
Score = 29.9 bits (64), Expect = 4.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 326 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 409
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein.
Length = 198
Score = 29.9 bits (64), Expect = 4.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 326 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 409
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>BX537652-1|CAD97804.1| 793|Homo sapiens hypothetical protein
protein.
Length = 793
Score = 28.7 bits (61), Expect = 9.1
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 40 PSRTSFRP*ENCNCGSILQTRTWSVACKWTPPRPGRTQTSSVQTTGTYPFARQGKVL 210
PS + + + + G T WS+ PP P + S VQT G FA QGK +
Sbjct: 81 PSHSESQATPHSSYGLCTSTPVWSLQ---RPPCPPKVH-SEVQTDGNSQFASQGKTV 133
>BC042613-1|AAH42613.1| 753|Homo sapiens CCDC14 protein protein.
Length = 753
Score = 28.7 bits (61), Expect = 9.1
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 40 PSRTSFRP*ENCNCGSILQTRTWSVACKWTPPRPGRTQTSSVQTTGTYPFARQGKVL 210
PS + + + + G T WS+ PP P + S VQT G FA QGK +
Sbjct: 41 PSHSESQATPHSSYGLCTSTPVWSLQ---RPPCPPKVH-SEVQTDGNSQFASQGKTV 93
>BC040285-1|AAH40285.1| 753|Homo sapiens CCDC14 protein protein.
Length = 753
Score = 28.7 bits (61), Expect = 9.1
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 40 PSRTSFRP*ENCNCGSILQTRTWSVACKWTPPRPGRTQTSSVQTTGTYPFARQGKVL 210
PS + + + + G T WS+ PP P + S VQT G FA QGK +
Sbjct: 41 PSHSESQATPHSSYGLCTSTPVWSLQ---RPPCPPKVH-SEVQTDGNSQFASQGKTV 93
>AL833312-1|CAD91162.1| 455|Homo sapiens hypothetical protein
protein.
Length = 455
Score = 28.7 bits (61), Expect = 9.1
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 40 PSRTSFRP*ENCNCGSILQTRTWSVACKWTPPRPGRTQTSSVQTTGTYPFARQGKVL 210
PS + + + + G T WS+ PP P + S VQT G FA QGK +
Sbjct: 41 PSHSESQATPHSSYGLCTSTPVWSLQ---RPPCPPKVH-SEVQTDGNSQFASQGKTV 93
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,441,932
Number of Sequences: 237096
Number of extensions: 1604875
Number of successful extensions: 4442
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 4183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4438
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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