Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B23
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   209   8e-55
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    31   0.36 
U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical pr...    30   0.63 
Z11115-14|CAC42391.1|  644|Caenorhabditis elegans Hypothetical p...    30   0.83 
Z11115-13|CAA77454.2|  642|Caenorhabditis elegans Hypothetical p...    30   0.83 
AF269694-1|AAF76193.1|  642|Caenorhabditis elegans LIN-9S protein.     30   0.83 
AF269693-1|AAF76192.1|  644|Caenorhabditis elegans LIN-9L protein.     30   0.83 
Z67995-5|CAA91945.2|  176|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical p...    27   7.8  
AC024090-2|AAK67219.1|  658|Caenorhabditis elegans Hypothetical ...    27   7.8  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  209 bits (510), Expect = 8e-55
 Identities = 91/132 (68%), Positives = 117/132 (88%)
 Frame = +2

Query: 38  IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 217
           +Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F  V
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64

Query: 218 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 397
           DIR+ V GGGHVAQ+YA+RQA++KAL+A+Y KYVDE SK+E+K+I   YD+SLLVADPRR
Sbjct: 65  DIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRR 124

Query: 398 CEPKKFGGPGAR 433
            E KKFGGPGAR
Sbjct: 125 RESKKFGGPGAR 136


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 314 YVDEASKKEIKDILVQYDRSLLVADPRRCE 403
           + DE  +KE+ D+  QYDRS+ + D  R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180


>U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical
           protein C42D4.2 protein.
          Length = 500

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +2

Query: 206 FSGVDIRVTVKG---GGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSL 376
           F G + R T+ G   GG VA + +    ++  L + +Q+Y+  +S      + +Q +R+ 
Sbjct: 114 FGGNNKRTTLLGHSYGGTVASMLSFSTKVNTDL-SLFQQYISMSSPTNFDTLELQVERTY 172

Query: 377 LVADPRRCEPK 409
             A+   C PK
Sbjct: 173 RFAEHANCLPK 183


>Z11115-14|CAC42391.1|  644|Caenorhabditis elegans Hypothetical
           protein ZK637.7b protein.
          Length = 644

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 30/107 (28%), Positives = 53/107 (49%)
 Frame = +2

Query: 41  QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVD 220
           +AV+    ++    V +C +G  V  V+   L L++  L    LQ  +  +G +K S VD
Sbjct: 538 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 592

Query: 221 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 361
           ++     G  +++   IR AI    +AF+Q YV E   K+   I+++
Sbjct: 593 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 632


>Z11115-13|CAA77454.2|  642|Caenorhabditis elegans Hypothetical
           protein ZK637.7a protein.
          Length = 642

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 30/107 (28%), Positives = 53/107 (49%)
 Frame = +2

Query: 41  QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVD 220
           +AV+    ++    V +C +G  V  V+   L L++  L    LQ  +  +G +K S VD
Sbjct: 536 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 590

Query: 221 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 361
           ++     G  +++   IR AI    +AF+Q YV E   K+   I+++
Sbjct: 591 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 630


>AF269694-1|AAF76193.1|  642|Caenorhabditis elegans LIN-9S protein.
          Length = 642

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 30/107 (28%), Positives = 53/107 (49%)
 Frame = +2

Query: 41  QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVD 220
           +AV+    ++    V +C +G  V  V+   L L++  L    LQ  +  +G +K S VD
Sbjct: 536 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 590

Query: 221 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 361
           ++     G  +++   IR AI    +AF+Q YV E   K+   I+++
Sbjct: 591 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 630


>AF269693-1|AAF76192.1|  644|Caenorhabditis elegans LIN-9L protein.
          Length = 644

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 30/107 (28%), Positives = 53/107 (49%)
 Frame = +2

Query: 41  QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVD 220
           +AV+    ++    V +C +G  V  V+   L L++  L    LQ  +  +G +K S VD
Sbjct: 538 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 592

Query: 221 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 361
           ++     G  +++   IR AI    +AF+Q YV E   K+   I+++
Sbjct: 593 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 632


>Z67995-5|CAA91945.2|  176|Caenorhabditis elegans Hypothetical
           protein M153.3 protein.
          Length = 176

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 127 SIYTQHSMSSFAVCYRSCSFLTAEN 53
           S+  QHS+ +F VC ++C F  + N
Sbjct: 130 SLTCQHSVFAFRVCRKTCGFCASVN 154


>Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical
           protein T06C12.14 protein.
          Length = 245

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 114 NTPCPRLQYATAVAVFLRPKTCTAWIGSRLASCTAAS 4
           NT C R     A A   R  TCT++I     +C A S
Sbjct: 183 NTYCQRTCSRCASATTTRSSTCTSFISDSSTACRAWS 219


>AC024090-2|AAK67219.1|  658|Caenorhabditis elegans Hypothetical
           protein C52E2.4 protein.
          Length = 658

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 365 RIELECL*SPS*MLRLHISGRKR 297
           R  L+C  +PS +LRLHISG  R
Sbjct: 139 RFALKCF-NPSKLLRLHISGSNR 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,169,645
Number of Sequences: 27780
Number of extensions: 233673
Number of successful extensions: 592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)