Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B22
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.0  
SPBC31F10.09c |nut2|med10|mediator complex subunit Med10|Schizos...    25   5.0  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   5.0  

>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -3

Query: 345 PASVIIHN----NKHIICGYSIYVSRQSRHKASV 256
           P + +IH     N H++  +SIYVS  SR  +S+
Sbjct: 317 PVNDLIHGSCTENPHLLVRHSIYVSIHSREPSSL 350


>SPBC31F10.09c |nut2|med10|mediator complex subunit
           Med10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -2

Query: 175 VKSLDDTSRDVYSLYLIAAL*FIQFGNN---YIT*INDLVNKRRQTVVFQTYNI 23
           +KSL D SR V +L     L +I+ G N   Y    ++LV K  Q V  + Y I
Sbjct: 49  LKSLPDISRKVNNLIPQDVLEYIEQGRNPDVYARQFSELVQKDNQYVNGKLYAI 102


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 327 HNNKHIICGYSIYVSRQ 277
           HNN +II GY  Y S++
Sbjct: 179 HNNPYIIRGYRFYTSKR 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,651,583
Number of Sequences: 5004
Number of extensions: 29324
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)