Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B20
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    29   0.26 
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    27   1.8  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    26   3.1  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   4.2  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 29.5 bits (63), Expect = 0.26
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -2

Query: 438  IHV*CASGGPGIFAPVRDVE--CLVSRLRPT-WHTGTKEGASRRGVCLGDTQS 289
            +H+ CAS  P ++ P  + E  C +++L P  W    +   +  GVC+    S
Sbjct: 928  VHLICASWTPDVYVPAEESEPVCGIAQLPPNRWEKKCEVCGNSFGVCVSSPNS 980


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +2

Query: 155 YVQKKEAHKLVPTGLFFFYVVEICSLNARTYAENRSFLHTLILATDWVSPRHTPLREA 328
           +V   E    +  G F   V+E CSL   +Y   +      I +  W++  H P+ +A
Sbjct: 70  HVHVVELIDCIKAGRFIHLVMEYCSLGDLSYFIRKREKFNSIPSLAWINIDHPPVYKA 127


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 317 LREAPSLVPVCQVGRNRLTKHSTSLTGAKMPG 412
           L+EAP +VPV ++ R+ L      LT    PG
Sbjct: 225 LQEAPDMVPVGELPRHILLNADRYLTNQITPG 256


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 372 VSRLRPTWHTGTKEGASRRG 313
           +SR  PTWHT TK      G
Sbjct: 82  LSRSEPTWHTRTKRSLGLLG 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,709
Number of Sequences: 5004
Number of extensions: 39787
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)