Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B20
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0896 + 8830912-8830984,8831088-8832389,8832502-8832756,883...    29   1.8  
06_03_1388 - 29822789-29823307                                         29   1.8  
06_02_0069 - 11126235-11127538,11128361-11128421                       27   7.2  
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56...    27   9.5  
07_03_0808 - 21668100-21669092                                         27   9.5  
07_01_0543 + 4008439-4008808,4009209-4009274,4009409-4009584           27   9.5  
05_04_0452 - 21373876-21375531                                         27   9.5  
04_03_0879 + 20508414-20510051                                         27   9.5  
02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467           27   9.5  

>08_01_0896 +
           8830912-8830984,8831088-8832389,8832502-8832756,
           8832908-8833011
          Length = 577

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 284 ATDWVSPRHTPLREAPSLVPVCQVGRNRLTKHSTSLTGAKMPGPPEAH 427
           ATDWV+    P R   +L+    VG N + +    LTGA +      H
Sbjct: 97  ATDWVASNVAPYRSRGTLISGVAVG-NEVFRQRPELTGALVSAMRNVH 143


>06_03_1388 - 29822789-29823307
          Length = 172

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 271 HVDPRHRLGVTEAHPSARGALFGARVPGWP*PTD*TLHVPNRRKDARAS 417
           H  PR RL VT A PS+R     A     P P    +H  +R   +RA+
Sbjct: 39  HQQPRARLAVTTARPSSRTRARAAAASAPPVPP--VVHQQHRLSSSRAA 85


>06_02_0069 - 11126235-11127538,11128361-11128421
          Length = 454

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 376 FSQSVTANLAHGHQRGRLSQR 314
           FS+S+  NLAHGH    L+++
Sbjct: 353 FSRSIYGNLAHGHDHVHLAKK 373


>08_01_0080 +
           566509-566746,566904-567151,567347-567532,567639-567734,
           567836-567907,567990-568106,570531-571676
          Length = 700

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -3

Query: 362 YGQPGTRAPKRAPLAEGCASVTPSLWRGSTCAKNFGFRHTSGRST 228
           YG PG  AP+ AP  +G     P    G    +   +  T G +T
Sbjct: 497 YGGPGQWAPRGAPAGDGTYQAPPPTSYGPPSQQPPAYGQTYGPTT 541


>07_03_0808 - 21668100-21669092
          Length = 330

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -3

Query: 353 PGTRAPKRAPLAEGCASVTPSLWRGSTCAKNFGFRHTSGRSTSRFQPRKKK 201
           P + AP+R P   G AS  PS     + A    FR T   +     P KK+
Sbjct: 158 PPSTAPRRTPPPPGSASPRPSSPESFSSATGARFRSTCFSTRYSAIPSKKE 208


>07_01_0543 + 4008439-4008808,4009209-4009274,4009409-4009584
          Length = 203

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 371 SVGYGQPGTRAPKRAPLAEGCASVTPSLWRGSTCA 267
           S G G  GT A   AP AE C SV   +   ++CA
Sbjct: 53  SGGGGGNGTAAGGGAPTAECCQSVAAMINTSASCA 87


>05_04_0452 - 21373876-21375531
          Length = 551

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 51  RLRICLEKFELR*VLSIDFTLRMLQKHYKLTN*LHTCKRRRRIS 182
           RLR C+   +L  V      LR+ Q  Y  T  +H C   RR++
Sbjct: 20  RLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVT 63


>04_03_0879 + 20508414-20510051
          Length = 545

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 241 PGVQRADFNHVKKKKSCRYELMRLLLLHVCSQL 143
           PG     FN  +K++ C  EL+ + L+  CSQL
Sbjct: 280 PGEALRIFNEFQKQEICPDELVIVGLMSACSQL 312


>02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467
          Length = 421

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 250 RKPKFFAHVDPRHRLGVTEAH 312
           RKP+F  H   RHR  V  AH
Sbjct: 183 RKPRFLGHPVHRHRARVPRAH 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,494,121
Number of Sequences: 37544
Number of extensions: 292346
Number of successful extensions: 729
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)