Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B20
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z81047-3|CAB02829.1|  389|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z37139-2|CAA85486.1|  384|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPas...    27   6.5  
Z81458-5|CAB03825.2|  252|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical
           protein K11D9.2b protein.
          Length = 1004

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 232 ERPDVCRKPKFFAHVDPRHRLGVTE 306
           ++ + CR+ K FA V+P H+  + +
Sbjct: 666 QQSEACRRAKLFARVEPSHKSKIVD 690


>Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical
           protein K11D9.2a protein.
          Length = 1059

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 232 ERPDVCRKPKFFAHVDPRHRLGVTE 306
           ++ + CR+ K FA V+P H+  + +
Sbjct: 666 QQSEACRRAKLFARVEPSHKSKIVD 690


>Z81047-3|CAB02829.1|  389|Caenorhabditis elegans Hypothetical
           protein C41G6.5 protein.
          Length = 389

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 318 RGVCLGDTQSVARINVCKKLRFSAYVRAFNEQISTT*KKKSPVGTS 181
           R +C GD Q  + +  C+  RF + V+    + S   +KK  + T+
Sbjct: 76  RYLCDGDNQCKSMLKKCRACRFESCVKTAGMKRSLVRRKKPTIKTT 121


>Z37139-2|CAA85486.1|  384|Caenorhabditis elegans Hypothetical
           protein C14B1.3 protein.
          Length = 384

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 308 ASVTPSL-WRGSTCAKNFGFRHTSGRSTSRFQPRKKKKVL*VRAYAP 171
           ++V PSL WR +   K F     +   TS F    KK VL  R Y+P
Sbjct: 74  SNVLPSLEWRRAATQKKFVGNEDNEIDTSSFNFNIKKIVLSGRGYSP 120


>AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPase
           protein.
          Length = 1059

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 232 ERPDVCRKPKFFAHVDPRHRLGVTE 306
           ++ + CR+ K FA V+P H+  + +
Sbjct: 666 QQSEACRRAKLFARVEPSHKSKIVD 690


>Z81458-5|CAB03825.2|  252|Caenorhabditis elegans Hypothetical
           protein C03E10.6 protein.
          Length = 252

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 362 YGQPGTRAPKRAPLAEGCASVTPSLWRGSTCAKNFGFRH 246
           YGQPG++ P   P +  C    P  +  ST   N G  H
Sbjct: 57  YGQPGSQGPIGPPGSSSCNYECPPGYY-STSRNNAGIEH 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,307,170
Number of Sequences: 27780
Number of extensions: 241624
Number of successful extensions: 608
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)