Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B20
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   0.68 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.4  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 0.68
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 227 SLNARTYAENRSFLHTLILATDWVSPRHT 313
           S+N+ TY      L T+ L T W+ P  T
Sbjct: 244 SMNSTTYVTLTIVLMTMTLMTLWLEPSST 272


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 206 FYVVEICSLNARTYAE 253
           FY++  CSLN  TY +
Sbjct: 148 FYLIIECSLNLETYLD 163


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 204 FFTWLKSAR*TPGRMPKTEV 263
           F TW K  R  PG   ++E+
Sbjct: 364 FITWYKDGRQLPGTGRQSEL 383


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 204 FFTWLKSAR*TPGRMPKTEV 263
           F TW K  R  PG   ++E+
Sbjct: 364 FITWYKDGRQLPGTGRQSEL 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,010
Number of Sequences: 438
Number of extensions: 2701
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)