Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B19
         (326 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0263 - 27257150-27259213                                         27   2.6  
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306...    27   2.6  
07_01_0330 + 2319014-2319532                                           26   8.0  
02_05_0670 - 30764007-30764135,30764404-30764548,30765200-307653...    26   8.0  

>02_05_0263 - 27257150-27259213
          Length = 687

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 86  YVLDTSIVNLY*TCHANKSKISS 154
           Y+L+T IVNLY  C A +S +++
Sbjct: 168 YILETCIVNLYTRCGAYQSAVAT 190


>02_01_0418 -
           3059575-3061279,3061915-3061973,3064270-3064353,
           3064395-3064559
          Length = 670

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 89  VLDTSIVNLY*TCHANKSKISSTDTIIGDNYWLRVRYHDTLLQ 217
           + + S  ++  T HA KS  + T   IG+N+W  V   D  ++
Sbjct: 356 ITENSFSDIAKTLHAFKSSRNLTTLFIGENFWGEVIPQDETIE 398


>07_01_0330 + 2319014-2319532
          Length = 172

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 7/31 (22%), Positives = 22/31 (70%)
 Frame = +1

Query: 67  LILAMVVCIGHVHSKSLLNLSCKQIKDFVNG 159
           ++  +++    ++ KSLL+++C+++ D ++G
Sbjct: 108 VLFKLILAANFLNIKSLLDMTCQRVADMMSG 138


>02_05_0670 -
           30764007-30764135,30764404-30764548,30765200-30765309,
           30765578-30765761,30765857-30765969,30766242-30766412,
           30766493-30766756,30767537-30767782
          Length = 453

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 85  VCIG-HVHSKSLLNLSCKQIKDFVNGHNY 168
           VC G  +H   L+   C +++DF+  HN+
Sbjct: 327 VCTGVMMHGYGLVKKLCAELQDFMRQHNF 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,312,662
Number of Sequences: 37544
Number of extensions: 148839
Number of successful extensions: 241
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)