Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B19
         (326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70307-5|CAA94331.1|  209|Caenorhabditis elegans Hypothetical pr...    35   0.016
Z77659-1|CAB01164.1|  401|Caenorhabditis elegans Hypothetical pr...    29   1.0  
AC006655-2|AAF39876.1|  208|Caenorhabditis elegans Hypothetical ...    27   3.2  
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    26   5.6  

>Z70307-5|CAA94331.1|  209|Caenorhabditis elegans Hypothetical
           protein C39E9.5 protein.
          Length = 209

 Score = 34.7 bits (76), Expect = 0.016
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
 Frame = +1

Query: 55  VRALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV----S*HPAATE 222
           ++  L+LA+V C+G  H++   +   KQ    VN HN  R  +AKG+     +   +AT 
Sbjct: 1   MQTALVLALV-CVG-AHAQ--FSEGGKQ--SMVNAHNAVRSSIAKGEYVAKGTKKDSATN 54

Query: 223 MKYMVWDEELXXXXXXXXXQNQNFHNPDKTSG 318
           M  M WD  L              H+PDK+ G
Sbjct: 55  MLKMKWDNSLAQSAQNYANGCPMQHSPDKSYG 86


>Z77659-1|CAB01164.1|  401|Caenorhabditis elegans Hypothetical
           protein F23B12.1 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 203 HDT*PLASNCLL*LCPLTKSLICLHDKFSRDLL 105
           +D   LA NC+     ++K +IC+H   S DL+
Sbjct: 216 YDAFQLAFNCMPLCAVVSKKIICMHGGISEDLI 248


>AC006655-2|AAF39876.1|  208|Caenorhabditis elegans Hypothetical
           protein H10D18.4 protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = +1

Query: 73  LAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV----S*HPAATEMKYMVW 240
           +   +C+  +   +    S       V+ HN  R  +A+G      +  P+A+ M+ +VW
Sbjct: 1   MKFALCLLAIFGCATAQFSSTAQGQIVDAHNKLRSAIAQGSYVAAGTQEPSASNMRKIVW 60

Query: 241 DE 246
           DE
Sbjct: 61  DE 62


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 185 ASNCLL*LCPLTKSLIC 135
           +SNC+L L PL  SL+C
Sbjct: 134 SSNCVLLLAPLINSLVC 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,058,353
Number of Sequences: 27780
Number of extensions: 126629
Number of successful extensions: 247
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)