Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B18
         (68 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    22   9.6  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    22   9.6  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    22   9.6  

>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 2   HEASLKAVMFSVQDKVILVTGG 67
           H A++KA+ +S   + IL +GG
Sbjct: 415 HIAAVKAITWSPHQRGILASGG 436


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 2   HEASLKAVMFSVQDKVILVTGG 67
           H A++KA+ +S   + IL +GG
Sbjct: 290 HTAAVKAIGWSPHQRGILASGG 311


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 713

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 32 SVQDKVILVTGG 67
          +VQD+ ILVTGG
Sbjct: 2  AVQDEYILVTGG 13


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,244
Number of Sequences: 5004
Number of extensions: 706
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 2,362,478
effective HSP length: 4
effective length of database: 2,342,462
effective search space used: 42164316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)