Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B17
         (88 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    24   3.1  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    23   7.2  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    23   7.2  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    22   9.5  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 18  TMPIVLVFGICHVSIR 65
           T+P+V+V+ +C VS R
Sbjct: 440 TVPLVVVYAVCAVSAR 455


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 6   QEFGTMPIVLVFGICH 53
           + + + P++LVF ICH
Sbjct: 517 ENYLSAPVILVFFICH 532


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 26   DSFGVRNMSRIYSW 67
            DSF V N  R++SW
Sbjct: 1391 DSFSVDNCLRLFSW 1404


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 29  SFGVRNMSRIYSWPL 73
           SF + N  R+Y+W L
Sbjct: 291 SFAIDNKGRVYAWGL 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 350,716
Number of Sequences: 5004
Number of extensions: 2583
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 10
effective length of database: 2,312,438
effective search space used: 41623884
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)