Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B17
         (88 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              19   7.2  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    18   9.5  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    18   9.5  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 27 IVLVFGIC 50
          IVL+FG C
Sbjct: 4  IVLIFGFC 11


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
          determiner protein.
          Length = 180

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 62 NRYVTYSEHQNYRHRAE 12
          N Y    E++ YR R++
Sbjct: 48 NSYKNEKEYRKYRERSK 64


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
          determiner protein.
          Length = 180

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 62 NRYVTYSEHQNYRHRAE 12
          N Y    E++ YR R++
Sbjct: 48 NSYKNEKEYRKYRERSK 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,743
Number of Sequences: 438
Number of extensions: 359
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 10
effective length of database: 141,963
effective search space used:  2555334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)