Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B16
         (90 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   1.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   7.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    18   9.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 7   HE-FGTRPPLSADVLRHKQLTMIRSPRST 90
           HE FG++  +   +  H   +++ SPR +
Sbjct: 266 HETFGSKKTMELHIKTHSDSSVVGSPRDS 294


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = +2

Query: 20   RGHRLVRTC 46
            RG++++RTC
Sbjct: 1316 RGNKILRTC 1324


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = +3

Query: 15  RHEATA*CGRAKTQAIDYDTIAP 83
           RH+     GR     +D+D   P
Sbjct: 299 RHQKRYFFGRDSVDHVDFDEFLP 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,315
Number of Sequences: 438
Number of extensions: 124
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 11
effective length of database: 141,525
effective search space used:  2547450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)