Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B14
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...   109   1e-25
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    25   3.4  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   3.4  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    23   7.9  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score =  109 bits (261), Expect = 1e-25
 Identities = 49/96 (51%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
 Frame = +1

Query: 28  MVNVPKQRRTY--XXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 201
           MVN+PK R+TY              +QYKK  +   AQG+RRYDRKQ G+GGQ+KP+F  
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60

Query: 202 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGD 309
                  +VLRLEC  CK ++Q+ LKRCKHFELGG+
Sbjct: 61  KAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGE 96


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +2

Query: 35  TYPNSAEHTAKNANVTKFTKCLSTKSLRKGTPLRAE 142
           T      H  +N +  KFT+      L  GTP + E
Sbjct: 195 TMLEETRHGLENGDFVKFTEVKGMPGLNDGTPRKVE 230


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 298 VQSAYNASGPPVTSPCSLHIPDE 230
           +QS  N+  PP++SP S   P E
Sbjct: 327 LQSCTNSPSPPLSSPASSASPSE 349


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 103 TETLCELCDICIFCSMFCAVWVRSPFLRLFSTP 5
           TE    L D  +  SM CA++    F +L  TP
Sbjct: 191 TEGRLILLDATLLFSMVCAIYCYVRFFKLRHTP 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,140,213
Number of Sequences: 5004
Number of extensions: 17893
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)