Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_B14
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0646 + 20250684-20250686,20251522-20251701,20251899-202519... 107 2e-24
07_03_0641 + 20214245-20214247,20215086-20215265,20215463-202155... 107 2e-24
07_03_0226 + 15395380-15395382,15396993-15397172,15397286-153973... 107 2e-24
07_03_0648 + 20257442-20257528,20257688-20257867,20258055-202581... 105 9e-24
07_03_0643 + 20239224-20239310,20239470-20239649,20239837-202399... 105 9e-24
07_03_0640 + 20207497-20207554,20208457-20208482,20208522-202087... 105 9e-24
07_03_0639 + 20203902-20203988,20204152-20204331,20204529-202046... 105 9e-24
07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561 46 8e-06
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426... 30 0.43
11_01_0266 - 2010572-2011879 26 5.2
09_06_0148 - 21214460-21214561,21214993-21215339,21215428-212155... 26 6.9
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171... 26 6.9
02_02_0338 + 9105725-9106581,9106950-9107091 25 9.2
>07_03_0646 +
20250684-20250686,20251522-20251701,20251899-20251973,
20252072-20252131
Length = 105
Score = 107 bits (256), Expect = 2e-24
Identities = 50/96 (52%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Frame = +1
Query: 28 MVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 201
MVNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 202 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGD 309
IVL+L+C CK SQ +KRCKHFE+GGD
Sbjct: 61 KAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGD 96
>07_03_0641 +
20214245-20214247,20215086-20215265,20215463-20215537,
20215636-20215695
Length = 105
Score = 107 bits (256), Expect = 2e-24
Identities = 50/96 (52%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Frame = +1
Query: 28 MVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 201
MVNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 202 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGD 309
IVL+L+C CK SQ +KRCKHFE+GGD
Sbjct: 61 KAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGD 96
>07_03_0226 +
15395380-15395382,15396993-15397172,15397286-15397360,
15397466-15397525
Length = 105
Score = 107 bits (256), Expect = 2e-24
Identities = 50/96 (52%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Frame = +1
Query: 28 MVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 201
MVNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 202 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGD 309
IVL+L+C CK SQ +KRCKHFE+GGD
Sbjct: 61 KAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGD 96
>07_03_0648 +
20257442-20257528,20257688-20257867,20258055-20258129,
20258230-20258289
Length = 133
Score = 105 bits (251), Expect = 9e-24
Identities = 49/95 (51%), Positives = 61/95 (64%), Gaps = 2/95 (2%)
Frame = +1
Query: 31 VNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 204
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89
Query: 205 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGD 309
IVL+L+C CK SQ +KRCKHFE+GGD
Sbjct: 90 AKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGD 124
>07_03_0643 +
20239224-20239310,20239470-20239649,20239837-20239911,
20240012-20240071
Length = 133
Score = 105 bits (251), Expect = 9e-24
Identities = 49/95 (51%), Positives = 61/95 (64%), Gaps = 2/95 (2%)
Frame = +1
Query: 31 VNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 204
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89
Query: 205 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGD 309
IVL+L+C CK SQ +KRCKHFE+GGD
Sbjct: 90 AKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGD 124
>07_03_0640 +
20207497-20207554,20208457-20208482,20208522-20208701,
20208891-20208965,20209062-20209121
Length = 132
Score = 105 bits (251), Expect = 9e-24
Identities = 49/95 (51%), Positives = 61/95 (64%), Gaps = 2/95 (2%)
Frame = +1
Query: 31 VNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 204
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 29 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 88
Query: 205 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGD 309
IVL+L+C CK SQ +KRCKHFE+GGD
Sbjct: 89 AKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGD 123
>07_03_0639 +
20203902-20203988,20204152-20204331,20204529-20204603,
20204696-20204755
Length = 133
Score = 105 bits (251), Expect = 9e-24
Identities = 49/95 (51%), Positives = 61/95 (64%), Gaps = 2/95 (2%)
Frame = +1
Query: 31 VNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 204
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89
Query: 205 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGD 309
IVL+L+C CK SQ +KRCKHFE+GGD
Sbjct: 90 AKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGD 124
>07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561
Length = 62
Score = 45.6 bits (103), Expect = 8e-06
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +1
Query: 223 IVLRLECADCKVRSQVALKRCKHFELGGD 309
IVL+L+C CK SQ +KRCKHF++GGD
Sbjct: 25 IVLKLQCQSCKHYSQHPIKRCKHFKIGGD 53
>03_04_0161 +
17838466-17838551,17842379-17842445,17842537-17842662,
17842756-17842886,17843121-17843220,17843334-17843466,
17843500-17843544,17843545-17843608,17843692-17844469,
17844897-17845229,17845427-17845634,17845733-17845809,
17846168-17846240,17846343-17846413,17846597-17846716,
17846815-17846879,17846974-17847124
Length = 875
Score = 29.9 bits (64), Expect = 0.43
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 142 RRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRCK 288
+ + + QG GG S +F ++LE ADC + +V RCK
Sbjct: 207 KELEGRLQGIGGFSNCLFTFLFAGVSMDEVKLEQADCDMDERVYCDRCK 255
>11_01_0266 - 2010572-2011879
Length = 435
Score = 26.2 bits (55), Expect = 5.2
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +1
Query: 97 SQYKKSKERHAAQGRRRYDR 156
S+ +K+++RH A+G+ YD+
Sbjct: 3 SEKRKTRDRHGARGKASYDK 22
>09_06_0148 -
21214460-21214561,21214993-21215339,21215428-21215538,
21215673-21215835,21215921-21215999,21216110-21216228
Length = 306
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/49 (26%), Positives = 20/49 (40%)
Frame = +1
Query: 40 PKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSK 186
P + R Y + K RH+A+ + RY R+ Q Y + K
Sbjct: 250 PHREREYSRMIGDAWNRLAADDKMVYYRHSAEDKERYKREMQEYNERLK 298
>05_03_0682 -
16916437-16916686,16916761-16916822,16917082-16917147,
16917606-16917737,16917925-16918026,16918146-16918343,
16918409-16918555,16918804-16918914,16919661-16920194,
16920269-16920425,16920511-16920660,16920744-16920883,
16921668-16921784,16922759-16922932,16923020-16923187,
16923323-16923464,16923610-16923728,16924997-16925098,
16925618-16925701,16926843-16927142
Length = 1084
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 189 HLQKEGKNYKENCTSSGM 242
HL K K++KENC S G+
Sbjct: 278 HLPKIQKDHKENCCSCGL 295
>02_02_0338 + 9105725-9106581,9106950-9107091
Length = 332
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 100 QYKKSKERHAAQGRRRYDRKQQGYGGQS 183
QY++ +++ A +R+Y R + G GG S
Sbjct: 57 QYRQQQQQQPANRKRQYGRHRGGGGGCS 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,692,998
Number of Sequences: 37544
Number of extensions: 125880
Number of successful extensions: 354
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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