Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_B14
(309 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical pr... 112 5e-26
AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal... 112 5e-26
U43282-2|AAY86313.1| 73|Caenorhabditis elegans Hypothetical pr... 28 1.2
Z83316-7|CAB05890.1| 134|Caenorhabditis elegans Hypothetical pr... 27 2.0
Z11126-4|CAA77472.2| 180|Caenorhabditis elegans Hypothetical pr... 27 2.7
U29244-15|AAC71096.2| 471|Caenorhabditis elegans Hypothetical p... 26 4.7
L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical pr... 26 6.2
Z71181-7|CAA94900.2| 485|Caenorhabditis elegans Hypothetical pr... 25 8.1
L11247-1|AAA28010.2| 484|Caenorhabditis elegans Hypothetical pr... 25 8.1
AC006680-5|AAK72301.2| 300|Caenorhabditis elegans Serpentine re... 25 8.1
>Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical
protein C09H10.2 protein.
Length = 105
Score = 112 bits (269), Expect = 5e-26
Identities = 53/94 (56%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Frame = +1
Query: 28 MVNVPKQRRTYXXXX-XXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 204
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 205 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGG 306
IVLR+EC +CK + Q+ +KRCKHFELGG
Sbjct: 61 AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGG 94
>AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal
protein L44 L41 protein.
Length = 105
Score = 112 bits (269), Expect = 5e-26
Identities = 53/94 (56%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Frame = +1
Query: 28 MVNVPKQRRTYXXXX-XXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 204
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 205 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGG 306
IVLR+EC +CK + Q+ +KRCKHFELGG
Sbjct: 61 AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGG 94
>U43282-2|AAY86313.1| 73|Caenorhabditis elegans Hypothetical
protein T22E5.7 protein.
Length = 73
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -3
Query: 301 QVQSAYNASGPPVTSPCSLHIPDEVQFSL 215
++++ + +G P+T PCS+ + +E FSL
Sbjct: 19 EMKAYWGKAGAPITLPCSISLFNEESFSL 47
>Z83316-7|CAB05890.1| 134|Caenorhabditis elegans Hypothetical
protein B0379.6 protein.
Length = 134
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 165 GLWWSIQTHLQKEGKNYKENCTSSGMCR 248
GLW + HL K G+ NC G R
Sbjct: 48 GLWRQKRAHLMKGGRRLTRNCVGCGGSR 75
>Z11126-4|CAA77472.2| 180|Caenorhabditis elegans Hypothetical
protein ZK643.6 protein.
Length = 180
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -3
Query: 106 CTETLCELCDICIFCSMFCAVWVRSPFLRLF 14
C +T C C+IC + C +WV F F
Sbjct: 134 CPKT-CNACNICEDANKMCPIWVPRGFCSKF 163
>U29244-15|AAC71096.2| 471|Caenorhabditis elegans Hypothetical
protein ZK1248.15 protein.
Length = 471
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 35 TYPNSAEHTAKNANVTKFTKCLSTKSLRKGTPLRAED 145
TYP+S +++N NV K TK S R PL D
Sbjct: 426 TYPSSTYQSSQNGNVVKTTK---PNSNRPKIPLSLSD 459
>L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical
protein F44E2.3 protein.
Length = 244
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 229 LRLECADCKVRSQVALKRCKHFE 297
+ +E A+CK R + + K+CK E
Sbjct: 152 MAVELAECKKRDEESRKKCKQLE 174
>Z71181-7|CAA94900.2| 485|Caenorhabditis elegans Hypothetical
protein K07C5.7 protein.
Length = 485
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 169 NPVVYGRNVFCPERRAFP*TFCTETLCELCDICIFCSM 56
NP+V R++ P + FC E CE CD C +
Sbjct: 393 NPLVNSRDINLPLK------FCVENKCESCDEAPECQL 424
>L11247-1|AAA28010.2| 484|Caenorhabditis elegans Hypothetical
protein F09G8.5 protein.
Length = 484
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 181 IDHHNPVVYGRNVFCPERRA 122
I+ P VYGR+V P RRA
Sbjct: 413 IEMKRPPVYGRSVSMPRRRA 432
>AC006680-5|AAK72301.2| 300|Caenorhabditis elegans Serpentine
receptor, class x protein60 protein.
Length = 300
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 109 FCTETLCELCDICIFCSMFCAVWVRSPFLRLFS 11
FC E L L I + FCAVWV + + FS
Sbjct: 85 FCYE-LSVLTHFLISINRFCAVWVPLKYEKWFS 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,647,876
Number of Sequences: 27780
Number of extensions: 112783
Number of successful extensions: 324
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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