Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B13
         (278 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   1.5  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    24   4.6  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    23   8.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    23   8.0  

>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 225 FAIRLLEVFSFPFITN 272
           FAIR L++ SFP ++N
Sbjct: 579 FAIRFLKIISFPLLSN 594


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 139  TV*NSTLLLTLAINTFPIQILTYITER 59
            T+ N TL  + + N FPI+ +  ITER
Sbjct: 1167 TLKNLTLRFSQSENVFPIEQIIDITER 1193


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 275  HIGNERKGKNLEQSNCKTITSDISFNHLQITGNYI 171
            HI +  K KN+E+   +    D+   H + T  YI
Sbjct: 1005 HIAHYFKEKNIEEEMTRESYFDLQAGHTRNTALYI 1039


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 275  HIGNERKGKNLEQSNCKTITSDISFNHLQITGNYI 171
            HI +  K KN+E+   +    D+   H + T  YI
Sbjct: 1005 HIAHYFKEKNIEEEMTRESYFDLQAGHTRNTALYI 1039


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,172,568
Number of Sequences: 5004
Number of extensions: 20378
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)