Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B13
         (278 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0758 + 31541991-31543139                                         27   2.1  
11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,570...    26   4.9  
12_02_0793 - 23200915-23202931,23203136-23203959                       25   6.5  

>02_05_0758 + 31541991-31543139
          Length = 382

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -2

Query: 115 LTLAINTFPIQILTYITERLSC*LEFISLRIWIE 14
           L +A++ FP+ ILTY   +LS  LEF+   + +E
Sbjct: 267 LHIAVSRFPL-ILTYSEVKLSRSLEFLKAEVGLE 299


>11_01_0692 -
           5700394-5700474,5700546-5702675,5705033-5706169,
           5709679-5709975
          Length = 1214

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 277 YILVMKGKEKTSSNLIAKQSLLIFPSITYKSLEITLFK 164
           Y+  +  K+K   N I K S LIF SI+  S  +TL K
Sbjct: 594 YLKALGIKDKMIPNCITKLSKLIFLSISGSSAILTLPK 631


>12_02_0793 - 23200915-23202931,23203136-23203959
          Length = 946

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 3/16 (18%)
 Frame = -3

Query: 192 TNHW---KLHCLKCII 154
           T HW   K+HCLKC +
Sbjct: 116 TRHWIAKKIHCLKCCV 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,687,516
Number of Sequences: 37544
Number of extensions: 106614
Number of successful extensions: 206
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)