Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B13
         (278 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81088-1|CAB03124.1|  364|Caenorhabditis elegans Hypothetical pr...    26   3.5  
Z36238-7|CAA85278.2|  506|Caenorhabditis elegans Hypothetical pr...    26   4.6  
Z92784-5|CAB07196.3|  554|Caenorhabditis elegans Hypothetical pr...    25   8.0  

>Z81088-1|CAB03124.1|  364|Caenorhabditis elegans Hypothetical
           protein F53F1.1 protein.
          Length = 364

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 121 LLLTLAINTFPIQILTYITERLSC*LEFISLRIWIE 14
           LL TLA+N  PIQ   Y   ++ C    IS++I  E
Sbjct: 40  LLATLAVNPVPIQNSLYGDVQVECDSRTISVQIKTE 75


>Z36238-7|CAA85278.2|  506|Caenorhabditis elegans Hypothetical
           protein R74.8a protein.
          Length = 506

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 180 KLHCLKCIINSNIKPFKIPPY 118
           KLH +K     NI P+K PPY
Sbjct: 472 KLHWVKMESIENITPWKAPPY 492


>Z92784-5|CAB07196.3|  554|Caenorhabditis elegans Hypothetical
           protein F31C3.6a protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 217 VIVLQLDCSRFFPFLSLPIC 276
           V++++LDC  F   +S P C
Sbjct: 207 VVMIKLDCKTFMSAVSAPFC 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,245,020
Number of Sequences: 27780
Number of extensions: 108720
Number of successful extensions: 213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)