Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B13
         (278 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   4.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   6.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   6.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   6.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   6.5  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    19   8.6  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 2.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 207 FLQSLTNHWKL 175
           F++SL NHW L
Sbjct: 791 FMESLDNHWIL 801


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 124  WNFKRFYI*INYAL 165
            WN KRF+  + YA+
Sbjct: 1191 WNEKRFWERLRYAI 1204


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 80  YLDWESVY 103
           Y DWE VY
Sbjct: 431 YTDWEEVY 438


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
          opsin protein.
          Length = 371

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 95 FPNPDINLHYRTIVLLI 45
          +P P+ +LHY   +L I
Sbjct: 40 YPEPNPSLHYLLALLYI 56


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -3

Query: 75  LTLQNDCPVNW 43
           + L+N CP +W
Sbjct: 377 MRLRNGCPADW 387


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 80  YLDWESVY 103
           Y DWE VY
Sbjct: 431 YTDWEEVY 438


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +1

Query: 82  SGLGKCLL 105
           SG+GKCL+
Sbjct: 17  SGIGKCLI 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,685
Number of Sequences: 438
Number of extensions: 1701
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5369883
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)