Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B12
         (331 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1109 - 24044583-24045218                                         28   2.0  
12_01_0736 + 6582371-6585370                                           27   3.6  
12_01_0718 + 6339982-6342981                                           26   6.2  

>07_03_1109 - 24044583-24045218
          Length = 211

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 188 KVRVLELIEIKIVYLNDGRIILLHLRTVNSAEVNKY 295
           +VR+ EL   +IV   DG IILLH RT     +N +
Sbjct: 123 RVRLPELRCHRIVGFTDGLIILLHKRTTAVRVLNPF 158


>12_01_0736 + 6582371-6585370
          Length = 999

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 160 DFSNNKGVQKSSGIRTYRNKNSIFKRWSNNI---VTPTHC*FCRS*QVL 297
           D+SNN+         TY  K  IFK   NN+   + P+ C   +S Q++
Sbjct: 593 DYSNNQFSSMPLNFSTYLKKTIIFKASKNNLSGNIPPSICDGIKSLQLI 641


>12_01_0718 + 6339982-6342981
          Length = 999

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +1

Query: 160 DFSNNKGVQKSSGIRTYRNKNSIFKRWSNNI---VTPTHC*FCRS*QVL 297
           D+SNN+         TY  K  IFK   NN+   + P  C   +S Q++
Sbjct: 593 DYSNNQFSSMPLNFSTYLKKTIIFKASKNNLSGNIPPLICDGIKSLQLI 641


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,581,417
Number of Sequences: 37544
Number of extensions: 88767
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)