Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B11
         (291 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39848-6|AAL11100.1|  317|Caenorhabditis elegans Not-like (yeast...    59   5e-10
U39848-5|AAL11099.1|  367|Caenorhabditis elegans Not-like (yeast...    59   5e-10
U39848-4|AAA80691.1|  444|Caenorhabditis elegans Not-like (yeast...    59   5e-10
U41993-8|AAA83449.1|  497|Caenorhabditis elegans Temporarily ass...    32   0.079
U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily ass...    32   0.079
U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical pr...    25   9.1  
AF036705-8|AAB95169.1|  685|Caenorhabditis elegans Hypothetical ...    25   9.1  

>U39848-6|AAL11100.1|  317|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform c protein.
          Length = 317

 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 27/46 (58%), Positives = 38/46 (82%)
 Frame = +2

Query: 152 GIQTLPDGKVTNIPETMIPNQFGIVGLLTFIRAAESDPSLVSLALG 289
           GI T PDG+VTNIP +M+ +QFG+ GL+T++R  + +PS+VSLALG
Sbjct: 36  GIITHPDGEVTNIPASMLDDQFGMAGLVTYLRTVD-NPSIVSLALG 80


>U39848-5|AAL11099.1|  367|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform b protein.
          Length = 367

 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 27/46 (58%), Positives = 38/46 (82%)
 Frame = +2

Query: 152 GIQTLPDGKVTNIPETMIPNQFGIVGLLTFIRAAESDPSLVSLALG 289
           GI T PDG+VTNIP +M+ +QFG+ GL+T++R  + +PS+VSLALG
Sbjct: 86  GIITHPDGEVTNIPASMLDDQFGMAGLVTYLRTVD-NPSIVSLALG 130



 Score = 31.5 bits (68), Expect = 0.10
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 17 PTSEQSEFTMSSEDFPALPGTSTG 88
          P+    EF + +EDFPALPG  +G
Sbjct: 14 PSLTNPEFQIQNEDFPALPGVGSG 37


>U39848-4|AAA80691.1|  444|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 2, isoform a protein.
          Length = 444

 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 27/46 (58%), Positives = 38/46 (82%)
 Frame = +2

Query: 152 GIQTLPDGKVTNIPETMIPNQFGIVGLLTFIRAAESDPSLVSLALG 289
           GI T PDG+VTNIP +M+ +QFG+ GL+T++R  + +PS+VSLALG
Sbjct: 163 GIITHPDGEVTNIPASMLDDQFGMAGLVTYLRTVD-NPSIVSLALG 207



 Score = 31.5 bits (68), Expect = 0.10
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 17  PTSEQSEFTMSSEDFPALPGTSTG 88
           P+    EF + +EDFPALPG  +G
Sbjct: 91  PSLTNPEFQIQNEDFPALPGVGSG 114


>U41993-8|AAA83449.1|  497|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 153, isoform a protein.
          Length = 497

 Score = 31.9 bits (69), Expect = 0.079
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 167 PDGKVTNIPETMIPNQFGIVGLLTFI 244
           PDG + NIP TM+ +Q+G+  +L  +
Sbjct: 121 PDGDMNNIPPTMLSDQYGMAAMLPIL 146


>U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 153, isoform b protein.
          Length = 733

 Score = 31.9 bits (69), Expect = 0.079
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 167 PDGKVTNIPETMIPNQFGIVGLLTFI 244
           PDG + NIP TM+ +Q+G+  +L  +
Sbjct: 357 PDGDMNNIPPTMLSDQYGMAAMLPIL 382



 Score = 30.7 bits (66), Expect = 0.18
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +2

Query: 35  EFTMSSEDFPALPGTSTG 88
           +FT++SEDFPALPG   G
Sbjct: 105 KFTITSEDFPALPGVRGG 122


>U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical
           protein F18C5.4 protein.
          Length = 308

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 290 APAPATLGSDPIP 252
           AP PATL SDP P
Sbjct: 274 APVPATLPSDPAP 286


>AF036705-8|AAB95169.1|  685|Caenorhabditis elegans Hypothetical
           protein F37C4.3 protein.
          Length = 685

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 182 TNIPETMIPNQFGIVGLLTFI 244
           TNIPE +    +G++GL++ +
Sbjct: 162 TNIPEKLQYGYYGVIGLISLV 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,682,068
Number of Sequences: 27780
Number of extensions: 71214
Number of successful extensions: 264
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)