Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B11
         (291 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   0.76 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   7.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      19   9.4  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 0.76
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 222 IPNWFGIIVSGIFVTL 175
           +PNW  ++++G+F  L
Sbjct: 32  LPNWTDLVLAGLFTML 47


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 163 ITRW*GNEYTGDNDTEPVRYSWTA 234
           IT+W GN  +  ND   +  SW A
Sbjct: 419 ITQWQGNPISPLNDWYSLASSWPA 442


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +1

Query: 223 SWTADVHPCSGIGSE 267
           +W  +   CSG+G E
Sbjct: 772 TWNTNAVDCSGLGVE 786


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/26 (26%), Positives = 12/26 (46%)
 Frame = +2

Query: 2   HEVKQPTSEQSEFTMSSEDFPALPGT 79
           HE +   +    F   ++ FP  PG+
Sbjct: 282 HEAESEHTSTPNFLSEAKIFPPTPGS 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,869
Number of Sequences: 438
Number of extensions: 934
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)