Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B10
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    27   0.79 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   2.4  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   4.2  
SPBC215.04 |git11||heterotrimeric G protein gamma subunit Git11 ...    25   4.2  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    24   9.7  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    24   9.7  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    24   9.7  
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha...    24   9.7  

>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 249 RSLEIPTCNNIP-LLTSVIPPKPNPLSGM*QHQDIFETRLIS*KYNKI 109
           RS + P+CN    L T +I   P P +   QHQ  F   +IS  +N I
Sbjct: 533 RSAKHPSCNCFSHLQTKLIDSGPKPANNSYQHQSNFIGVVISTNHNII 580


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 33   LTPYYLFEISLSFNKFAN 86
            L  Y +F+ISL FN+F+N
Sbjct: 1818 LVLYCMFDISLEFNEFSN 1835


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 261 FISYVFKAILYTITLKLYRKIN 326
           F+ Y+F +I+YT  L +Y   N
Sbjct: 693 FVQYIFLSIMYTNVLNVYAFCN 714


>SPBC215.04 |git11||heterotrimeric G protein gamma subunit Git11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 72

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = -2

Query: 225 NNIP--LLTSVIPPKPNP 178
           NNIP  ++ SV PPK NP
Sbjct: 25  NNIPEPMMVSVAPPKANP 42


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 197 ITEVR-RGMLLHVGISNERFILVYKLCF*SNTIYNYVK 307
           +T+VR + ++L     +++ I   K C  S++I+N++K
Sbjct: 549 LTQVRPKELILEKSKISQKSIRAIKYCVSSSSIWNFIK 586


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 240 EIPTCNNIPLLTSVIPPKPN 181
           + PT +N   ++SV PP PN
Sbjct: 212 DYPTSSNEETISSVKPPSPN 231


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 329 IILFNLLLYVILYTYRYII 385
           II  NLL++V +Y Y Y++
Sbjct: 170 IIEINLLVHVTMYYYYYLV 188


>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 363

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 228 MLESLTNGSF*FISYVFKAILY 293
           +LE LTNGS   ISY   + +Y
Sbjct: 53  LLEKLTNGSVIEISYTGTSFIY 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,517,815
Number of Sequences: 5004
Number of extensions: 28828
Number of successful extensions: 50
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)