Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B10
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0774 - 6004040-6004371,6004634-6005215,6005391-6005657,600...    27   4.1  
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    27   5.4  
05_04_0186 + 18866762-18866949,18867207-18867345,18868068-188682...    26   9.4  

>01_01_0774 -
          6004040-6004371,6004634-6005215,6005391-6005657,
          6005845-6006163
          Length = 499

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 46 ICLRLVYLLTSLPTPIY 96
          +CL L+YLLT+LP  +Y
Sbjct: 21 LCLSLLYLLTTLPLALY 37


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 261 TKMNRSLEIPTCNNIPLLTSVIPPKPNPLS 172
           TK +R   +P   ++ L  S +PP PNPL+
Sbjct: 63  TKRSRGNFLPPNRSLLLPASNLPPNPNPLA 92


>05_04_0186 +
           18866762-18866949,18867207-18867345,18868068-18868295,
           18869023-18869081,18869411-18869482,18870239-18870287,
           18870431-18870661,18872018-18872187,18872274-18872478,
           18872826-18873494,18873592-18873819,18873901-18874689
          Length = 1008

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 88  VLANLLKDKLISNK*YGVNKE 26
           VL  LLK+KLI +  YG+N E
Sbjct: 64  VLGTLLKNKLIPDPFYGLNNE 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,222,108
Number of Sequences: 37544
Number of extensions: 139393
Number of successful extensions: 211
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)