Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_B10
(394 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024882-6|AAF60925.2| 340|Caenorhabditis elegans Seven tm rece... 27 3.6
Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical pr... 26 8.4
Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical pr... 26 8.4
Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical pr... 26 8.4
AL023810-4|CAD59138.1| 384|Caenorhabditis elegans Hypothetical ... 26 8.4
AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical ... 26 8.4
AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical ... 26 8.4
AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical ... 26 8.4
AL008881-3|CAD59164.1| 384|Caenorhabditis elegans Hypothetical ... 26 8.4
AL008881-1|CAA15517.2| 343|Caenorhabditis elegans Hypothetical ... 26 8.4
>AC024882-6|AAF60925.2| 340|Caenorhabditis elegans Seven tm
receptor protein 153 protein.
Length = 340
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 267 SYVFKAIL-YTITLKLYRKINQ*FYLICYFMLFSI 368
S V +IL Y + K +K+ +L+CYF LFS+
Sbjct: 19 SLVINSILIYLVITKSSKKLGNYRHLMCYFSLFSM 53
>Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical
protein F36H2.1c protein.
Length = 1071
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 273 VFKAILYTITLKLYRKINQ*FYLICYFML--FSIPID 377
+F + Y ++ LY+ + Y CY ML FS+ +D
Sbjct: 884 IFSCVFYFASVSLYQGVLMVAYSTCYTMLPVFSLVVD 920
>Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical
protein F36H2.1b protein.
Length = 1035
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 273 VFKAILYTITLKLYRKINQ*FYLICYFML--FSIPID 377
+F + Y ++ LY+ + Y CY ML FS+ +D
Sbjct: 848 IFSCVFYFASVSLYQGVLMVAYSTCYTMLPVFSLVVD 884
>Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical
protein F36H2.1a protein.
Length = 1074
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 273 VFKAILYTITLKLYRKINQ*FYLICYFML--FSIPID 377
+F + Y ++ LY+ + Y CY ML FS+ +D
Sbjct: 887 IFSCVFYFASVSLYQGVLMVAYSTCYTMLPVFSLVVD 923
>AL023810-4|CAD59138.1| 384|Caenorhabditis elegans Hypothetical
protein Y9C2UA.1b protein.
Length = 384
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 326 PIILFNLLLYVILYTYRYIIF 388
PI LFNL Y+I T+ +I F
Sbjct: 196 PIDLFNLATYLIFTTFTFIYF 216
>AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical
protein F36H2.1c protein.
Length = 1071
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 273 VFKAILYTITLKLYRKINQ*FYLICYFML--FSIPID 377
+F + Y ++ LY+ + Y CY ML FS+ +D
Sbjct: 884 IFSCVFYFASVSLYQGVLMVAYSTCYTMLPVFSLVVD 920
>AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical
protein F36H2.1b protein.
Length = 1035
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 273 VFKAILYTITLKLYRKINQ*FYLICYFML--FSIPID 377
+F + Y ++ LY+ + Y CY ML FS+ +D
Sbjct: 848 IFSCVFYFASVSLYQGVLMVAYSTCYTMLPVFSLVVD 884
>AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical
protein F36H2.1a protein.
Length = 1074
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 273 VFKAILYTITLKLYRKINQ*FYLICYFML--FSIPID 377
+F + Y ++ LY+ + Y CY ML FS+ +D
Sbjct: 887 IFSCVFYFASVSLYQGVLMVAYSTCYTMLPVFSLVVD 923
>AL008881-3|CAD59164.1| 384|Caenorhabditis elegans Hypothetical
protein Y9C2UA.1b protein.
Length = 384
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 326 PIILFNLLLYVILYTYRYIIF 388
PI LFNL Y+I T+ +I F
Sbjct: 196 PIDLFNLATYLIFTTFTFIYF 216
>AL008881-1|CAA15517.2| 343|Caenorhabditis elegans Hypothetical
protein Y9C2UA.1a protein.
Length = 343
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 326 PIILFNLLLYVILYTYRYIIF 388
PI LFNL Y+I T+ +I F
Sbjct: 155 PIDLFNLATYLIFTTFTFIYF 175
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,956,128
Number of Sequences: 27780
Number of extensions: 148509
Number of successful extensions: 286
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -