Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B10
         (394 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   8.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 198 IPPKPNPLSGM*QHQD 151
           +PP+  PL G+  HQD
Sbjct: 489 LPPREAPLVGVQPHQD 504


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 73  TSLPTPIYK*GIDFIIFLRY 132
           T LP   Y   +DF +FL +
Sbjct: 265 TDLPKVPYPTALDFFVFLSF 284


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 237  IPTCNNIPLLTSVIPPKPNP 178
            + +  NIP+  S  PP P P
Sbjct: 1845 VGSARNIPVSGSPEPPPPPP 1864


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -1

Query: 325 LIFLYNFNVIV 293
           +++ YNFN+I+
Sbjct: 362 MLYQYNFNIII 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,266
Number of Sequences: 438
Number of extensions: 2235
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)