Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B09
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.16 
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   1.5  
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    25   3.5  
SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like |Schiz...    24   6.1  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   6.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    23   8.1  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    23   8.1  

>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 29.1 bits (62), Expect = 0.16
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 160 FLPTEMMTMKAEGWEGRGEPKKRWMEYVWEDMKVTGLNEDTVAYRDV 20
           FL   ++   A+ W+G+    KR ME++W  + +  L     AY DV
Sbjct: 75  FLIPLLLVNIAKYWKGKPPLLKRRMEFIWITLLILALAVGGFAYIDV 121


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 144 ISVGKNASPSAFLPRVHFQTHS*HCPFLSRHTSISDVAAVSRLSLAQQSDHTV 302
           +S  +N S S  LP    Q H+ HC       S S+   ++ L +  +  ++V
Sbjct: 474 LSCHRNLSFSESLPTAEDQVHNNHCAVSPSRRSSSNALYLATLPMGYERSNSV 526


>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = +1

Query: 52  ALLLSY-LPTRTPSIFXXXXXXXXXXXXXXXXXXXARTLLLQLFYHGCTSKLILDTVHSY 228
           AL+LS+ LP +  SI                     ++ L  + YHG +   +L  +H Y
Sbjct: 274 ALILSHPLPKKKHSIKSTLVVAPLSLIKQWESEVQTKSKLTAIVYHGASRYKLLKVIHEY 333


>SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -1

Query: 280 ASDRRETAATSEMDVWRDKNGQCQE*VWKCTRGRKAEGEAFLP---TEMMTMKAEG 122
           A D  E   TS ++   D  G+ +E  WK     KAE +  L     + + +KA+G
Sbjct: 5   AYDSEEEEQTSLVNENNDIKGRSEEPHWKIPNSPKAEVDTELEKKIKQFIKLKAKG 60


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 3   TRVFFYTSL*ATVSSFSPVTFISSHTYS 86
           T +F YTSL +T+++ S +  +   TY+
Sbjct: 132 TTIFQYTSLASTIAAQSGIASLVPQTYT 159


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +3

Query: 21  TSL*ATVSSFSPVTFISSHTYSIHLFFGSPLPSHPSAFIVIISVGKNA 164
           T L AT+++++P  F+S++ +   L   + L       +   ++GK A
Sbjct: 274 TELIATLAAYNPDEFVSNYLHVCMLHLLNLLKKENVKMLAFATIGKVA 321


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/48 (22%), Positives = 19/48 (39%)
 Frame = -1

Query: 163 AFLPTEMMTMKAEGWEGRGEPKKRWMEYVWEDMKVTGLNEDTVAYRDV 20
           +F+  ++ T  A  W         W+   W + ++   N D   Y DV
Sbjct: 548 SFVRGQLFTYVASNWRSSTNLILNWLSEEWYNDRLMLENPDCHEYEDV 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,303,211
Number of Sequences: 5004
Number of extensions: 22610
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)