Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_B09
(313 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-26|CAC48128.1| 922|Caenorhabditis elegans Hypothetical... 27 3.6
AL132876-25|CAH04764.1| 930|Caenorhabditis elegans Hypothetical... 27 3.6
AL132876-9|CAD21661.1| 959|Caenorhabditis elegans Hypothetical ... 27 3.6
AC199170-6|ABO33264.1| 325|Caenorhabditis elegans Hypothetical ... 26 6.4
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z19157-2|CAA79568.1| 826|Caenorhabditis elegans Hypothetical pr... 25 8.4
U67954-8|AAB52608.2| 782|Caenorhabditis elegans Sulfate permeas... 25 8.4
U56965-3|AAB52664.2| 467|Caenorhabditis elegans Hypothetical pr... 25 8.4
AY954524-1|AAX34432.2| 762|Caenorhabditis elegans anion transpo... 25 8.4
AY887909-1|AAX34421.1| 782|Caenorhabditis elegans anion transpo... 25 8.4
AF039718-3|AAB96744.1| 329|Caenorhabditis elegans Hypothetical ... 25 8.4
>AL132876-26|CAC48128.1| 922|Caenorhabditis elegans Hypothetical
protein Y105E8A.10c protein.
Length = 922
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 196 KCTRGRKAEGE-AFLPTEMMTMKAEGWEGRGEPKKR 92
K T G AE E ++P+E TM GW+ RG+ K +
Sbjct: 13 KTTMGGAAELEDEWIPSE--TMSGAGWKARGDRKPK 46
>AL132876-25|CAH04764.1| 930|Caenorhabditis elegans Hypothetical
protein Y105E8A.10b protein.
Length = 930
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 196 KCTRGRKAEGE-AFLPTEMMTMKAEGWEGRGEPKKR 92
K T G AE E ++P+E TM GW+ RG+ K +
Sbjct: 21 KTTMGGAAELEDEWIPSE--TMSGAGWKARGDRKPK 54
>AL132876-9|CAD21661.1| 959|Caenorhabditis elegans Hypothetical
protein Y105E8A.10a protein.
Length = 959
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 196 KCTRGRKAEGE-AFLPTEMMTMKAEGWEGRGEPKKR 92
K T G AE E ++P+E TM GW+ RG+ K +
Sbjct: 50 KTTMGGAAELEDEWIPSE--TMSGAGWKARGDRKPK 83
>AC199170-6|ABO33264.1| 325|Caenorhabditis elegans Hypothetical
protein T08D2.5 protein.
Length = 325
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +3
Query: 66 ISSHTYSIHLFFGSPLPSHPSAFIV 140
I H Y IH F HP AF +
Sbjct: 16 IQQHEYDIHTFIDQEPSIHPDAFTI 40
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 165 SPSAFLPRVHFQTHS*HCPFLSRHTSISDVAAVSRL 272
SP +F +++ T + PF+ R TS D SRL
Sbjct: 363 SPPSFEQKINSSTMTRDSPFVERPTSFGDSLDESRL 398
>Z19157-2|CAA79568.1| 826|Caenorhabditis elegans Hypothetical
protein ZC84.3 protein.
Length = 826
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 215 LSILITPHVHL*CCSRF 265
LSIL+TPHV CS F
Sbjct: 456 LSILLTPHVEKAICSMF 472
>U67954-8|AAB52608.2| 782|Caenorhabditis elegans Sulfate permease
family protein 3 protein.
Length = 782
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 166 LLQLFYHGCTSKLILDTVHSYHAT 237
+L L HG K++L T SY+AT
Sbjct: 119 VLSLMTHGAIEKVMLRTATSYNAT 142
>U56965-3|AAB52664.2| 467|Caenorhabditis elegans Hypothetical
protein C15H9.4 protein.
Length = 467
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 181 YHGCTSKLILDTVHSYHATRPSLMLQPFLVYH*RSNPIIQY 303
YH + L L H YH+ + + F H N I+Q+
Sbjct: 243 YHTADNSLYLPPNHPYHSAHAAPSEEGFNAIHEHLNSILQH 283
>AY954524-1|AAX34432.2| 762|Caenorhabditis elegans anion
transporter SULP-3b protein.
Length = 762
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 166 LLQLFYHGCTSKLILDTVHSYHAT 237
+L L HG K++L T SY+AT
Sbjct: 119 VLSLMTHGAIEKVMLRTATSYNAT 142
>AY887909-1|AAX34421.1| 782|Caenorhabditis elegans anion
transporter SULP-3a protein.
Length = 782
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 166 LLQLFYHGCTSKLILDTVHSYHAT 237
+L L HG K++L T SY+AT
Sbjct: 119 VLSLMTHGAIEKVMLRTATSYNAT 142
>AF039718-3|AAB96744.1| 329|Caenorhabditis elegans Hypothetical
protein T12F5.2 protein.
Length = 329
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +3
Query: 66 ISSHTYSIHLFFGSPLPSHPSAFIV 140
I H Y IH F HP AF +
Sbjct: 66 IQHHEYDIHTFIDQEPSIHPDAFTI 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,255,474
Number of Sequences: 27780
Number of extensions: 131005
Number of successful extensions: 391
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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