Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B08
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    26   2.6  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   3.4  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    25   4.5  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   4.5  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    25   5.9  

>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 465 STSAPDPGPLTNNKCSPCTICPVVACWMQRGLAAFIRATCI 343
           +TS   PG   NN+C P +I P  AC  +R L   I  T I
Sbjct: 182 ATSNEFPGLWCNNECIPSSI-PNCACGAKRQLEFQILPTLI 221


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -1

Query: 468 LSTSAPDP--GPLTNNKCSPCTIC 403
           L+ + P P   PLTN+  SP TIC
Sbjct: 388 LAGNQPSPLSSPLTNSNVSPSTIC 411


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 405 CPVVACWMQRGLAAFIRATCI 343
           CPV   ++Q G  AF  A C+
Sbjct: 30  CPVTLTFLQFGFVAFFSAVCL 50


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -2

Query: 476 EHNYLRLHRIRDH*QIISVHPAQFVPSWRVGCKGASLLLYAPHAFLRLPMVLTLI 312
           EH YL      DH    S+H          G K +SL  + P   L L M++ L+
Sbjct: 659 EHTYLYHFGRTDHRHNFSLHHLNLYYESSFGAKASSLFAFLPQ--LSLCMLIPLV 711


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 238 ISIVLREIKVSHVFKLTIFLFIHRHM 161
           +S+VL E ++   FKLTI  +IHR M
Sbjct: 406 LSLVLTESELE-AFKLTIKAWIHRRM 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,193
Number of Sequences: 5004
Number of extensions: 43903
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)