Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_B08
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0978 + 9841441-9842169,9842303-9842590,9842768-9843612,984... 29 1.5
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 29 1.9
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 29 1.9
06_01_0956 + 7374273-7374356,7374502-7374963,7375043-7375673,737... 29 2.6
01_01_0072 - 553300-553512,553589-553750,554136-554283,554368-55... 29 2.6
06_01_1147 + 9606860-9606989,9607078-9607811,9607890-9608126,960... 28 4.5
04_01_0048 + 522423-522552,522641-523374,523453-524828,528100-52... 28 4.5
04_03_0574 - 17338777-17339077,17339390-17340222,17340304-173407... 27 5.9
11_01_0185 + 1455635-1455817,1455997-1456051,1456415-1456611,145... 27 7.8
07_01_0917 + 7735696-7735896,7735907-7736404,7736481-7736813,773... 27 7.8
>08_01_0978 +
9841441-9842169,9842303-9842590,9842768-9843612,
9843941-9844223,9844303-9844416
Length = 752
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 158 IRCFKVIHAITLVVTLFWSRAT*LN 84
++C+ + H I LV+TL WSR LN
Sbjct: 616 LKCYSLRHWILLVITLKWSRVHYLN 640
>06_03_0092 +
16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 274 NNDTLHFSLHSRISIVLREIKVSHV 200
+NDTLH LH I+ R+IK S++
Sbjct: 154 SNDTLHHHLHGHPRIIHRDIKSSNI 178
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 280 MPNNDTLHFSLHSRISIVLREIKVSHV 200
+PNN TLH+ LH I+ R+IK S++
Sbjct: 378 VPNN-TLHYHLHGHPRIIHRDIKSSNI 403
>06_01_0956 +
7374273-7374356,7374502-7374963,7375043-7375673,
7375806-7375875,7376208-7376508
Length = 515
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 158 IRCFKVIHAITLVVTLFWSRAT*LNVRWVNYFEF 57
++C+ + H I LV+ WSR T LN ++F
Sbjct: 411 LKCYSLQHWILLVIVPKWSRVTYLNSNKTKDYDF 444
>01_01_0072 -
553300-553512,553589-553750,554136-554283,554368-554444,
554525-554595,554854-555184
Length = 333
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 271 NDTLHFSLHSRISIVLREIKVSHV 200
NDTLH LH I+ R+IK S++
Sbjct: 102 NDTLHHHLHGHPRIIHRDIKSSNI 125
>06_01_1147 +
9606860-9606989,9607078-9607811,9607890-9608126,
9608433-9609265,9609598-9609856,9610294-9610377,
9610484-9610498
Length = 763
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 158 IRCFKVIHAITLVVTLFWSRAT*LNVRWVNYFEF 57
++C+ + H I LV+ WSR T LN ++F
Sbjct: 640 LKCYSLRHWILLVIVPKWSRVTYLNSNKSKDYDF 673
>04_01_0048 +
522423-522552,522641-523374,523453-524828,528100-528400
Length = 846
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 158 IRCFKVIHAITLVVTLFWSRAT*LNVRWVNYFEF 57
++C+ + H I LV+ WSR T LN ++F
Sbjct: 742 LKCYSLRHWILLVIVPKWSRVTYLNSNKSKDYDF 775
>04_03_0574 -
17338777-17339077,17339390-17340222,17340304-17340765,
17340843-17341030,17341244-17341576,17341665-17341796,
17342604-17342643
Length = 762
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 158 IRCFKVIHAITLVVTLFWSRAT*LNVRWVNYFEF 57
++C+ + H I LV+ WSR T LN ++F
Sbjct: 658 LKCYTLRHWILLVIVPKWSRVTYLNSNKSKDYDF 691
>11_01_0185 +
1455635-1455817,1455997-1456051,1456415-1456611,
1456850-1457206,1457355-1457424,1457527-1457672,
1457786-1457831,1457910-1457962,1458507-1458651,
1459268-1459386,1459494-1459565,1459872-1459975,
1460117-1460173,1460260-1460452,1460535-1460678,
1460825-1460927,1461444-1461592,1462674-1462728,
1464037-1464227,1464580-1464701,1464831-1464978,
1465354-1465423,1465499-1465644,1466097-1466247,
1466614-1466732,1466807-1466848,1466849-1466961,
1467496-1467552,1467642-1467834,1468040-1468183,
1468567-1468665
Length = 1280
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 401 PSWRVGCKGASLLLYAPHAFLRLPMVLTLIKC 306
P+ + CK LL +PH+ LRLP + +C
Sbjct: 645 PNKQSRCKSRLLLTLSPHSILRLPSPNSWQRC 676
>07_01_0917 +
7735696-7735896,7735907-7736404,7736481-7736813,
7736991-7737314,7737367-7737836,7738165-7738447,
7738527-7738640
Length = 740
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 158 IRCFKVIHAITLVVTLFWSRAT*LN 84
++C+ + H I LV+TL WS LN
Sbjct: 604 LKCYSLQHWILLVITLKWSSVHYLN 628
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,431,759
Number of Sequences: 37544
Number of extensions: 280724
Number of successful extensions: 563
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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