Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B08
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical p...    31   0.43 
AL032639-7|CAA21631.2|  465|Caenorhabditis elegans Hypothetical ...    29   2.3  
AC024090-7|AAF35429.2|  294|Caenorhabditis elegans Hypothetical ...    28   3.0  
AF016428-1|AAO26001.1|  330|Caenorhabditis elegans Serpentine re...    28   4.0  
AL110477-19|CAJ43447.1|  327|Caenorhabditis elegans Hypothetical...    27   5.3  
AL110477-18|CAB54327.1|  312|Caenorhabditis elegans Hypothetical...    27   5.3  
AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg (sp...    27   7.0  

>U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical
            protein T08A9.1 protein.
          Length = 1330

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 171  WINRNIVSLKT*DTFISLRTIEIRECRLKWSVSLLGIPHFSDAN*TFYK 317
            W+N N+ SL++  T+    + +IREC  K+    L +  +     +FY+
Sbjct: 1136 WLNTNVSSLRSGGTYAIEDSPKIRECASKYKSMALKVSTYQGMEESFYQ 1184


>AL032639-7|CAA21631.2|  465|Caenorhabditis elegans Hypothetical
           protein Y38F1A.6 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 384 MQRGLAAFIRATCIPPIAYGLNPYKMSSLHQKN 286
           + RG+ + +  +C P  A   NP+K++ LH  N
Sbjct: 5   LARGILSKMGGSCCPHHAPATNPFKLAKLHGNN 37


>AC024090-7|AAF35429.2|  294|Caenorhabditis elegans Hypothetical
           protein C52E2.1 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 162 ICRWINRNIVSLKT*DTF-ISLRTIEIRECRL 254
           +CRW+NRN    K    F ++L  +E+++ R+
Sbjct: 87  VCRWLNRNFSIEKIIKNFLVALNLLEVKQLRV 118


>AF016428-1|AAO26001.1|  330|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 66 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 143 VIHAITLVVTLFWSRAT*LNVRWVNYFEFILAKHTIDQRLMIRS 12
           ++H +     L WS  T LN  W  + +FI+    I+Q LM+ S
Sbjct: 234 IVHCVVFAGILLWSVLTSLNSFWNFFPDFIIG---INQTLMVFS 274


>AL110477-19|CAJ43447.1|  327|Caenorhabditis elegans Hypothetical
           protein Y113G7B.5b protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 259 HFSLHSRISIVLREIKVSHVFKLTIFLFIHRHMKFDVLK 143
           HF   SRI+I LR++ VS   K+   L    H ++  +K
Sbjct: 229 HFFHFSRITIKLRKLSVSDAIKIRDDLMKSAHFEYAYIK 267


>AL110477-18|CAB54327.1|  312|Caenorhabditis elegans Hypothetical
           protein Y113G7B.5a protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 259 HFSLHSRISIVLREIKVSHVFKLTIFLFIHRHMKFDVLK 143
           HF   SRI+I LR++ VS   K+   L    H ++  +K
Sbjct: 229 HFFHFSRITIKLRKLSVSDAIKIRDDLMKSAHFEYAYIK 267


>AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg
           (spastic paraplegia)protein 7 protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 43  CFASMNSK*FTHLTLSYVALDQKSV 117
           CF S+NS+ F+  + S VA D KSV
Sbjct: 19  CFKSVNSRQFSVSSFSAVAKDDKSV 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,736,332
Number of Sequences: 27780
Number of extensions: 253028
Number of successful extensions: 566
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)