Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B08
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   3.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   3.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.0  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 79  LTLSYVALDQKSVTTNVIACITL 147
           +TL+YV +       N+I CI +
Sbjct: 36  ITLTYVVIFVTGFVGNIITCIVI 58


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 402 PVV-ACWMQRGLAAFIRATC 346
           PV+ ACW +    AF+R  C
Sbjct: 387 PVIYACWSRDFRRAFVRILC 406


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 21  HQSLINSVFCKYEFKVVYPSHI 86
           HQ  ++     YE+K + PSHI
Sbjct: 620 HQQHLDQWNWVYEWKELIPSHI 641


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 474 AQLSTSAPDPGPLTNNK 424
           +Q ST+ P PGP    K
Sbjct: 377 SQKSTTGPPPGPTPAQK 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,657
Number of Sequences: 438
Number of extensions: 2730
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)