Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_B06
(442 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 3.9
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 25 5.2
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 25 5.2
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 25 6.8
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 6.8
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 25 6.8
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 24 9.0
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 24 9.0
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 24 9.0
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 24 9.0
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz... 24 9.0
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 3.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 172 FRSSINTGPA*STPVCKKGNSSCARSFG 89
FRS ++ G V +KG+S C R +G
Sbjct: 697 FRSPVSAGVPIPKDVDEKGHSKCHRKYG 724
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 25.0 bits (52), Expect = 5.2
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = +3
Query: 48 RYKPKYIQPIMD-DL-PKERAQL 110
RY PK+IQPI++ D+ P + AQL
Sbjct: 241 RYWPKFIQPIVEGDIHPADYAQL 263
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -1
Query: 313 PRRPINRLRAAINASLVKSVTSSRCTAFTAKHTKTHMYDDVSLLPL 176
PR ++ LR+++N S+V+ + + T+TH Y + L +
Sbjct: 199 PRYSLDVLRSSLNNSIVEQHSEVSLRLKAPELTRTHSYQSSATLSI 244
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 24.6 bits (51), Expect = 6.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -1
Query: 286 AAINASLVKSVTSSRCTAFTAKHTKTHMYDDVSLLPLPFRSS 161
A++N SL + S+ + +T + K + L+P+PF S+
Sbjct: 348 ASLNDSLYSHPSVSKQSTWTEEELKEELESFGELVPVPFSST 389
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 24.6 bits (51), Expect = 6.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 6 RLARRTVHNCVRCSRYKPKYIQPIMDDLPKERAQLEFPFLHTGV 137
RL + C+RC+ I I+DD K L PF+ +GV
Sbjct: 777 RLHKAAREICLRCANA----ISMIVDDCRKHNVILTSPFIASGV 816
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 24.6 bits (51), Expect = 6.8
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +3
Query: 228 VKAVHLELVTDLTKDAFIAALNRFIGRRG-KPQTISSDNATTFLGAYNDLQMFFKCYSDN 404
+ V+L V D+T + RF+G R K I+ N T L A + Y N
Sbjct: 688 MNGVYLRTVIDVTSGQLLDTRTRFLGPRAVKIYPITMKNQNTVL-AVSSRTFLAYSYQQN 746
Query: 405 IKI 413
+++
Sbjct: 747 LQL 749
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 24.2 bits (50), Expect = 9.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 12 ARRTVHNCVRCSRYKPK 62
+RR +H+C+ C R K K
Sbjct: 16 SRRAIHSCLACRRKKLK 32
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 24.2 bits (50), Expect = 9.0
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +1
Query: 298 LSAVVVSRRLFRQTT---RQLFSELIMIYRCFLNVTQII 405
L + ++ R L R R LFSEL+ I VTQ I
Sbjct: 654 LESPIIKRSLIRNNRLKGRDLFSELVKITESSFQVTQDI 692
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 4/26 (15%)
Frame = +1
Query: 25 YTTVFVVLGI----NQNIYNRLWMTY 90
Y F+++GI N+N+Y RLW+++
Sbjct: 1998 YCASFLLIGISSFINENMYLRLWISH 2023
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 24.2 bits (50), Expect = 9.0
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1
Query: 199 DDVSLLPLPFRS 164
DD SLLP+P+RS
Sbjct: 295 DDASLLPMPWRS 306
>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
L35|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 24.2 bits (50), Expect = 9.0
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -1
Query: 280 INASLVKSVTSSRCTAFTAKHTKTHMYDDVSLLPLP 173
+ A L +S S A +KH H Y D+ + +P
Sbjct: 334 VGAHLWRSGWDSDAVALLSKHPSVHEYRDIRVERIP 369
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,226
Number of Sequences: 5004
Number of extensions: 37353
Number of successful extensions: 104
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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