Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B06
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0020 + 180963-181346,181432-181994,183000-183822                 29   1.7  
03_06_0595 - 34955345-34955464,34955495-34956256,34956384-349565...    28   3.8  
08_02_1149 + 24706429-24708105                                         27   5.1  
03_05_0406 + 23895593-23896141                                         27   5.1  
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200...    27   6.7  
03_02_0398 + 8121748-8122860,8122946-8123242                           27   8.8  
01_05_0790 + 25253363-25254136,25259037-25259897                       27   8.8  

>03_01_0020 + 180963-181346,181432-181994,183000-183822
          Length = 589

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 148 PA*STPVCKKGNSSCARSFGKSSIIGCIYFGLYL 47
           P    P C  G S CA + G    +G +Y GLY+
Sbjct: 140 PGLRPPPCSSGGSGCAAANGTQ--LGVLYLGLYM 171


>03_06_0595 -
           34955345-34955464,34955495-34956256,34956384-34956507,
           34957111-34957167,34958222-34958366,34958860-34958909,
           34959366-34959514,34959955-34960146
          Length = 532

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 45  SRYKPKYIQPIMDDLPKERAQLEFPFLHTGVDYAGPVLILDR 170
           S  +P Y  P++   P        PFL +GV Y  PV+  D+
Sbjct: 445 SSIQPPYGMPLLQPFPPPNPS---PFLTSGVSYGRPVITRDQ 483


>08_02_1149 + 24706429-24708105
          Length = 558

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -2

Query: 234 PLQQNIQKHICMMM*AYYLYLFDQVLTLARHNPRPYVRKETLAVLAPSVSHP 79
           P    +  H   M  AYY ++     TL   + RPY R+ TL     SV  P
Sbjct: 321 PCASALDVHGFAMNSAYYYHINTSKSTLRNLHVRPYQREGTLDTYPHSVESP 372


>03_05_0406 + 23895593-23896141
          Length = 182

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 54  KPKYIQPIMDDLPKERAQLEFPFLHTGVDYAGPVLILDRKG 176
           KPK   P  DD P+E   LEF      +DYA    ++++ G
Sbjct: 80  KPKTDGP-KDDKPEEETPLEFENFQGQIDYAVHQALINQSG 119


>03_05_0899 -
           28619081-28619208,28619309-28619369,28619936-28620095,
           28620200-28620237,28620341-28620394,28620562-28620636,
           28620744-28620872,28621172-28621259,28621340-28621446,
           28621547-28621595,28621683-28621786,28622019-28622133,
           28622517-28622596
          Length = 395

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 118 LSYIRAWIMPGQC*YLIEKVEVVSLHHHTYVFLYVL 225
           +S I A +MPGQ  + I  V  VS   H +V  Y+L
Sbjct: 213 ISGINAEVMPGQWEFQIGPVVGVSAGDHVWVARYIL 248


>03_02_0398 + 8121748-8122860,8122946-8123242
          Length = 469

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = -1

Query: 355 RKVVALSDEIVCGLPRRPINRLRAAINASLVKSVTSSRCTAFTAKHTKTHMYDDVSLLPL 176
           RK V  S  + C   +RP+    AA++A++  +         T K      YD  S  PL
Sbjct: 163 RKAVGGSTSLFCRPKKRPLAAPTAALDAAMKTAFGEELTLRDTIKPVLISCYDLKSSAPL 222

Query: 175 PF 170
            F
Sbjct: 223 VF 224


>01_05_0790 + 25253363-25254136,25259037-25259897
          Length = 544

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 37  FVVLGINQNIYNRLWMTYRR 96
           F + G+N  +Y+RLW+  RR
Sbjct: 146 FYMEGLNAQVYSRLWLPARR 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,805,449
Number of Sequences: 37544
Number of extensions: 231477
Number of successful extensions: 477
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)