Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B06
         (442 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC098580-1|AAH98580.1|  653|Homo sapiens Rho GTPase activating p...    31   1.8  
AK091196-1|BAC03606.1|  748|Homo sapiens protein ( Homo sapiens ...    31   1.8  

>BC098580-1|AAH98580.1|  653|Homo sapiens Rho GTPase activating
           protein 24 protein.
          Length = 653

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 291 NRFIGRRGKPQTISSDNATTFLGAYNDLQMFFKCYSDNIKIEMHNQCIEF 440
           +R +G R    T SSDN+ TF+G  +           ++K EM  Q IE+
Sbjct: 518 HRSVGGRSSRATSSSDNSETFVGNSSSNHSALHSLVSSLKQEMTKQKIEY 567


>AK091196-1|BAC03606.1|  748|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33877 fis, clone CTONG2007072, weakly similar to
           N-CHIMAERIN. ).
          Length = 748

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 291 NRFIGRRGKPQTISSDNATTFLGAYNDLQMFFKCYSDNIKIEMHNQCIEF 440
           +R +G R    T SSDN+ TF+G  +           ++K EM  Q IE+
Sbjct: 613 HRSVGGRSSRATSSSDNSETFVGNSSSNHSALHSLVSSLKQEMTKQKIEY 662


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,482,529
Number of Sequences: 237096
Number of extensions: 1293751
Number of successful extensions: 2494
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2494
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)