Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B04
         (184 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    26   0.57 
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   1.00 
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   1.7  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    24   3.1  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    22   9.3  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    22   9.3  

>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 0.57
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 183 VHACVLLQATGRKSSLLQPH*TPQTIGGDTLAVLQKLGLVMT 58
           V   +LL  +G     +Q +   +TI GD +AVL+KLG + T
Sbjct: 39  VRIIILLGYSGYGYHGIQINNPLKTIEGDVVAVLKKLGYLKT 80


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 66  PGLTSEAQLRYLLQWFGEFSEVAAERISY 152
           PG T+   LRY+++  G+FS    +R  +
Sbjct: 361 PGRTNNQMLRYMMECKGKFSHKMLKRSQF 389


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 102 GDTLAVLQKLGLVMTL*DFNAQLTNQA 22
           G  LA L+ LGL  +L  FN  +T  A
Sbjct: 304 GSYLAYLKSLGLATSLIAFNVSITEDA 330


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = +3

Query: 48  SLTMSSPGLTSEAQLRYLLQWFGEFSEVAAERISYQLLAAARR 176
           +L   +P  T       L +W  EF       +  ++L AARR
Sbjct: 350 ALATEAPNHTPAEASEILSRWMNEFKRDGTVTVRPEVLEAARR 392


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 93  RYLLQWFGEFSEVAAERISYQLLA 164
           R LL+W  EF  VA ++   +LLA
Sbjct: 236 RELLKWTVEFMSVAPKKQLIRLLA 259


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 78  SEAQLRYLLQWFGE 119
           SE +L+YL Q FGE
Sbjct: 315 SEEELKYLFQNFGE 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 708,031
Number of Sequences: 5004
Number of extensions: 9713
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)