Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B04
         (184 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0363 + 2827990-2828055,2828215-2829306,2829715-2829837,282...    25   6.5  

>03_01_0363 +
           2827990-2828055,2828215-2829306,2829715-2829837,
           2829994-2830110,2830248-2830429,2830558-2830744,
           2830846-2831055,2831177-2831305,2832179-2832247,
           2832751-2832873,2832957-2833007,2833101-2833250
          Length = 832

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 25  LICKLCIKVLQCHH 66
           L+C++C+ +LQ HH
Sbjct: 728 LVCRVCLVLLQTHH 741


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,123,497
Number of Sequences: 37544
Number of extensions: 75314
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 14,793,348
effective HSP length: 40
effective length of database: 13,291,588
effective search space used: 265831760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)