Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B04
         (184 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr...    29   0.33 
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr...    29   0.33 
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.     29   0.33 
U51995-6|AAA96074.1|  430|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical
           protein K12F2.2a protein.
          Length = 1066

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 11  IRHEA*FVSCALKSYNVITRPNF*STAKVSPPMVWGVQ*GCSREDF 148
           +R    F+S +LK Y+ +  P   S A  +PP  +G +    REDF
Sbjct: 451 LRGHTPFLSASLKLYDELCSPPSSSRASPAPPAAFGGKTSEKREDF 496


>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical
           protein K12F2.2a protein.
          Length = 1066

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 11  IRHEA*FVSCALKSYNVITRPNF*STAKVSPPMVWGVQ*GCSREDF 148
           +R    F+S +LK Y+ +  P   S A  +PP  +G +    REDF
Sbjct: 451 LRGHTPFLSASLKLYDELCSPPSSSRASPAPPAAFGGKTSEKREDF 496


>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
          Length = 1066

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 11  IRHEA*FVSCALKSYNVITRPNF*STAKVSPPMVWGVQ*GCSREDF 148
           +R    F+S +LK Y+ +  P   S A  +PP  +G +    REDF
Sbjct: 451 LRGHTPFLSASLKLYDELCSPPSSSRASPAPPAAFGGKTSEKREDF 496


>U51995-6|AAA96074.1|  430|Caenorhabditis elegans Hypothetical
           protein F07G6.3 protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 78  SEAQLRYLLQWFGEFSEVAAERISY 152
           ++  + Y+ +WF +  +V AER +Y
Sbjct: 159 AQVMVEYITEWFQDREKVIAERETY 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,058,909
Number of Sequences: 27780
Number of extensions: 58046
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 12,740,198
effective HSP length: 41
effective length of database: 11,601,218
effective search space used: 220423142
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)