Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B03
         (264 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   0.32 
SPBC1685.13 |||non classical export pathway protein |Schizosacch...    25   2.3  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    24   3.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   4.0  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    24   4.0  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    24   4.0  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    24   4.0  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    23   5.3  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    23   5.3  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    23   7.0  
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    23   9.2  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    23   9.2  

>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 27.5 bits (58), Expect = 0.32
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = -3

Query: 211  YFLWCSILFIYA*MHFYSAQNTTFTSKPMLRKKVVHYIIYIYE---FLLNY-IFFSFLAA 44
            YF WCSI FI A + FY    + F  K +    +  Y   I+    F++N+ + F  +  
Sbjct: 1383 YFGWCSIAFIQAFLVFY-VTYSLFGMKELNDNNIFAYGQLIFTAAIFIMNFKLVFIEMQY 1441

Query: 43   ENIIRNVAI 17
             NII  + +
Sbjct: 1442 INIISIIVL 1450


>SPBC1685.13 |||non classical export pathway protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 83  LVDIYNIMNNFFP*HWFRSECCVLCGIKMHLCINK*Y 193
           L+  Y+ +N  F        CC+   I++H C N+ Y
Sbjct: 77  LIAFYDFVNWVFA---LTGGCCIAVAIRVHACDNQKY 110


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -3

Query: 160 SAQNTTFTSKPMLRKKVVHYIIYIYEFLLNYIFFSF 53
           S+QNT+F    +    + H ++++  ++L + F +F
Sbjct: 4   SSQNTSFVWVVIATGFLFHLVLFVLSYVLGWPFTNF 39


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -2

Query: 230  LNIYSVLFSVVFDIIYLCINAFLFRTK--HNIHF*TNVKEKSCSLYYIYLRVFIELYF 63
            + I S   ++V+ + Y  I  FL       NI+  TNV +   S +Y Y ++  E  F
Sbjct: 2325 IEIASANSNIVYKLSYDVIRHFLKLVVLWKNIYVWTNVPDCDISRFYCYTKMLGEWMF 2382


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -3

Query: 133 KPMLRKKVVHYIIYIYEFLLNY 68
           KP   +  ++YI ++YE+L+++
Sbjct: 172 KPEKNQTYINYITHLYEYLVSF 193


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 130 PMLRKKVVHYIIYIYEFLLNY 68
           P+LRK  V YI+ IY   L Y
Sbjct: 593 PILRKHDVDYILIIYGGTLGY 613


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 94  YIYEFLLNYIFFSFLAAEN 38
           YIYE L+NY   S  +AEN
Sbjct: 331 YIYESLVNYSRSSLPSAEN 349


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 155 CG-IKMHLCINK*-YRTPQKIGRSIYSRRCGYFRTYPG 262
           CG I +  C+ K  +R PQ +  S +S   G+F T PG
Sbjct: 440 CGNISLFFCLYKRLWRQPQ-LCNSSHSPLLGFFTTLPG 476


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 5   RERTYRHVSNNVFRSKETKENI 70
           +ER   H++   + SK TKE +
Sbjct: 215 KERAVEHIAKKYYSSKITKEKV 236


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 134 RSECCVLCGI 163
           R +CC LCGI
Sbjct: 811 RKKCCALCGI 820


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 206 SVVFDIIYLCINAFLFRTKHNIH 138
           S+   I++L +N  + R KHNI+
Sbjct: 298 SITRYILWLFVNPSINRAKHNIY 320


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 251 YENIHTALNIYSVLFSV 201
           +E IH  LNIY+ + SV
Sbjct: 509 WERIHYVLNIYTTINSV 525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,196,483
Number of Sequences: 5004
Number of extensions: 23986
Number of successful extensions: 54
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)