Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_B03
(264 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0023 + 12575213-12575800 28 1.2
03_02_0044 - 5245204-5245538,5245946-5246093,5246182-5247395,524... 28 1.2
03_02_0944 - 12603801-12604919 26 3.6
11_01_0783 - 6554140-6554400,6554742-6556491,6556531-6556844 25 6.3
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 25 6.3
12_02_1139 - 26402332-26402367,26402915-26402953,26403136-264032... 25 8.3
11_06_0295 + 22033367-22034947,22035030-22035137,22035230-220353... 25 8.3
08_02_0687 + 20053426-20053824,20054194-20054508 25 8.3
06_01_0314 + 2255908-2255979,2256354-2256512,2257021-2257209,225... 25 8.3
04_03_0130 - 11622139-11623325,11626144-11627116 25 8.3
>07_03_0023 + 12575213-12575800
Length = 195
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 155 TKHNIHF*TNVKEKSCSLYYIYLRVFIELYFL 60
T +H TN++ ++ S++Y RV EL+F+
Sbjct: 39 TSTGLHVITNIENRAISMWYTRSRVSCELWFV 70
>03_02_0044 -
5245204-5245538,5245946-5246093,5246182-5247395,
5247730-5248003,5248141-5248293
Length = 707
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 80 KLVDIYNIMNNFFP*HWFRSECC 148
KL+DI++ + P W RS CC
Sbjct: 172 KLIDIFHSALEYLPKLWMRSGCC 194
>03_02_0944 - 12603801-12604919
Length = 372
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 8 ERTYRHVSNNVFRSKETKENIVQ*KLVDIYNIMNNF 115
+ T+ ++SNN+ K+ EN+ DI ++ + F
Sbjct: 215 DSTFGNLSNNINEGKQEAENLTSLNAFDIISLSSGF 250
>11_01_0783 - 6554140-6554400,6554742-6556491,6556531-6556844
Length = 774
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 210 IFCGVRYYLFMHKCIFIPHKTQHSLLNQC*GKKLFII 100
+FC +Y HKC K +S++++C G L I+
Sbjct: 325 LFCRRAFYNKGHKCPKELEKVANSIVDRCHGLPLAIV 361
>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 111 LFIILYISTSFY*TIFSLVSLLRKTL 34
L + Y+++S Y +IFS VSL+R L
Sbjct: 1321 LLLPAYLASSTYMSIFSTVSLVRSPL 1346
>12_02_1139 -
26402332-26402367,26402915-26402953,26403136-26403287,
26403496-26403997,26404260-26404373,26404509-26404736,
26405375-26405457,26405677-26405824,26406778-26406861
Length = 461
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 196 NTTENRTEYIFKAVWIFSYLSG 261
NTT R EY A+ F Y+SG
Sbjct: 430 NTTVKRVEYFLFALLQFCYISG 451
>11_06_0295 +
22033367-22034947,22035030-22035137,22035230-22035370,
22035576-22035625,22036100-22036168,22036649-22036781,
22037634-22037747,22037826-22038038,22038387-22038500,
22038768-22038900,22039304-22039416,22040204-22040284,
22040397-22040483
Length = 978
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 120 GKKLFIILYISTSFY 76
GKK FI+LY+S+ F+
Sbjct: 639 GKKRFILLYLSSDFH 653
>08_02_0687 + 20053426-20053824,20054194-20054508
Length = 237
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 121 RKKVVHYIIYIYEFLLNYIFFSFLAA 44
RK VV ++++Y + IF+ FLAA
Sbjct: 30 RKAVVAPVLWLYHLGEDIIFYGFLAA 55
>06_01_0314 +
2255908-2255979,2256354-2256512,2257021-2257209,
2257390-2257561,2257711-2257784,2257818-2257904,
2257975-2257998,2258100-2258225
Length = 300
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 105 IILYISTSFY*TIFSLVSLLRKTLFETWRYVRS 7
+ILY S + + FS S LR L+ W YV S
Sbjct: 26 VILYGGYSAFVSNFSSPSFLRTGLYRWWVYVVS 58
>04_03_0130 - 11622139-11623325,11626144-11627116
Length = 719
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = -1
Query: 234 RLEYILRPIFCGVRYYLFMHKCIFIPHKTQHSLLN 130
R EYI++ + C +++ + + F+P+KT H L++
Sbjct: 451 RHEYIVKLLGCCLQFEVPVLVYEFVPNKTLHYLIH 485
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,919,148
Number of Sequences: 37544
Number of extensions: 118227
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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