Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B03
         (264 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    29   3.5  
BC005094-1|AAH05094.1|  394|Homo sapiens transmembrane protein 7...    28   6.2  
AL589685-4|CAI14162.1|  394|Homo sapiens novel protein protein.        28   6.2  
AK056816-1|BAB71290.1|  283|Homo sapiens protein ( Homo sapiens ...    28   6.2  

>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 263 CPDKYENIHTALNIYSVLFSVVFDIIYLCINAFLFRTKH 147
           C   Y  IH  + IY+ ++  V+  IY+CI+  ++   H
Sbjct: 187 CIHMYTCIHRCIFIYTYVYICVYIHIYICIHVCVYSYIH 225


>BC005094-1|AAH05094.1|  394|Homo sapiens transmembrane protein 79
           protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 194 RTPQKIGRSIYSRRCGYFRTYP 259
           R P    R IY+ RCG F T+P
Sbjct: 228 RLPTMSSRLIYTLRCGVFATFP 249


>AL589685-4|CAI14162.1|  394|Homo sapiens novel protein protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 194 RTPQKIGRSIYSRRCGYFRTYP 259
           R P    R IY+ RCG F T+P
Sbjct: 228 RLPTMSSRLIYTLRCGVFATFP 249


>AK056816-1|BAB71290.1|  283|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32254 fis, clone PROST1000220. ).
          Length = 283

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 194 RTPQKIGRSIYSRRCGYFRTYP 259
           R P    R IY+ RCG F T+P
Sbjct: 228 RLPTMSSRLIYTLRCGVFATFP 249


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,868,359
Number of Sequences: 237096
Number of extensions: 693132
Number of successful extensions: 1151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 76,859,062
effective HSP length: 65
effective length of database: 61,447,822
effective search space used: 1351852084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)