Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B02
         (294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        24   5.3  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    23   7.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    23   7.1  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    23   7.1  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    23   7.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    23   7.1  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    23   7.1  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    23   7.1  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    23   7.1  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      23   9.3  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    23   9.3  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    23   9.3  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    23   9.3  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    23   9.3  
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...    23   9.3  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    23   9.3  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    23   9.3  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    23   9.3  

>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 170 PNLIPMNRLRIFPQRTLHNLLTKLPIN 90
           P+  P+ R+R F +  LH+ + ++ I+
Sbjct: 79  PHFFPIKRIRPFHENPLHSFVYRIMIS 105


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 65  SFFNSQQAPSLSKNP 21
           SFF S Q PS+ +NP
Sbjct: 143 SFFPSSQEPSIPENP 157


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 111 IDEIANKLAIASTADFI 61
           I EIA K A+ASTAD +
Sbjct: 398 ISEIAVKTAMASTADIL 414


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 122 VFFEEKFSDDSWESNWVYSEHPG 190
           VF E  F ++ WE   VY E  G
Sbjct: 233 VFGENLFDENDWEYKSVYDEDLG 255


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 9/46 (19%), Positives = 23/46 (50%)
 Frame = +2

Query: 134 EKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSE 271
           + F +D  + +W   EH  K   ++   + + +++ + D+  + SE
Sbjct: 49  QAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSEGD-DEPFEVSE 93


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -1

Query: 210  LNLPNSFPGCSLYTQFDSHESSENFSSKNTSQFIDEI 100
            L L  S PG     Q D   S E  SS   S  +DE+
Sbjct: 1526 LELKESLPGVLQNGQTDLDPSKEQMSSVIVSFLLDEL 1562


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 171 TQFDSHESSENFSSKNTSQFIDEIANK 91
           T  D+H   E+F S+  + FI E   K
Sbjct: 220 TAGDTHLGGEDFDSRLVNHFIQEFKRK 246


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 7/25 (28%), Positives = 11/25 (44%)
 Frame = +2

Query: 131  EEKFSDDSWESNWVYSEHPGKEFGK 205
            E    D +WE  W+    P +  G+
Sbjct: 1732 ERAIIDKAWEEGWIVPRPPAERTGR 1756


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 246 RIKVYRHLNTRGSTP 290
           R+ VY+HLN+ G  P
Sbjct: 733 RLNVYKHLNSDGHQP 747


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 213 NLNLPNSFPGCSLYTQFDSHESSENFSSKN 124
           NLNLPNS+   S   +  +  S  + SS +
Sbjct: 51  NLNLPNSYTNSSQKVRESTVNSQASLSSND 80


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -2

Query: 188 RGVHYI--PNLIPMNRLRIFPQRTLHNLLT 105
           R  H+I  PNL     L+  P+ T HN LT
Sbjct: 348 RNGHHISDPNLNSSISLKFAPEDTAHNSLT 377


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 134 EKFSDDSWESNWVYSE 181
           +K SD  WE N  Y+E
Sbjct: 347 KKLSDGHWEQNTTYNE 362


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +1

Query: 82   YCQFIGNFVNKL 117
            YC+ IGN++N++
Sbjct: 1491 YCELIGNYLNRV 1502


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 228 NFPAVNLNLPNSFPGCSLYTQFDSHESSENFSSKNTSQ 115
           N P ++ +LP+S    +L T   S    +  +S NT+Q
Sbjct: 231 NGPPIDKSLPSSEMDSNLQTNPSSISKGKKNNSNNTTQ 268


>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 213 NLNLPNSFPGCSLYTQFDSHESSENFSSKNT 121
           NLNL   FP  ++Y   D +  S     K T
Sbjct: 72  NLNLKKEFPHVTIYGGSDQNGVSHVLQDKET 102


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 149 DSWESNWVYSEHPGKEF 199
           D+W+  +++  H  KEF
Sbjct: 257 DTWDETFIFDVHRAKEF 273


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = -1

Query: 213 NLNLPNSFPGCSLYTQFDSHESSENFSSKNTSQFIDEIANKLAIASTAD 67
           NLN PN      L  + + +E+S    ++++    DE   ++++ S++D
Sbjct: 135 NLNKPNDL----LKAEIEDNEASHYSQNQSSDSDSDEAPEEVSLKSSSD 179


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 218 AGKFYNDAEADKGLQTSEHARFYAL 292
           A  F + +E+ KGL +SE    Y+L
Sbjct: 263 ADSFLSHSESIKGLSSSEQGTVYSL 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,266,996
Number of Sequences: 5004
Number of extensions: 23551
Number of successful extensions: 85
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)