Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_B02
(294 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 73 5e-14
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 73 5e-14
Z68302-4|CAB54515.1| 521|Caenorhabditis elegans Hypothetical pr... 29 0.76
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 29 0.76
Z77659-6|CAB01167.1| 401|Caenorhabditis elegans Hypothetical pr... 27 2.3
AF022976-2|AAC69081.1| 146|Caenorhabditis elegans Hypothetical ... 27 2.3
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr... 26 4.1
AF273806-1|AAG15155.1| 395|Caenorhabditis elegans nuclear recep... 26 4.1
AF022976-15|AAO26008.1| 324|Caenorhabditis elegans Nuclear horm... 26 4.1
AF022976-14|AAC69077.1| 393|Caenorhabditis elegans Nuclear horm... 26 4.1
Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical pr... 26 5.4
Z50863-2|CAA90737.1| 351|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z74042-16|CAA98527.3| 512|Caenorhabditis elegans Hypothetical p... 25 9.4
Z74042-15|CAD54157.1| 505|Caenorhabditis elegans Hypothetical p... 25 9.4
AL117204-27|CAB55133.2| 241|Caenorhabditis elegans Hypothetical... 25 9.4
AF047656-12|AAC05111.1| 168|Caenorhabditis elegans Hypothetical... 25 9.4
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 72.5 bits (170), Expect = 5e-14
Identities = 30/59 (50%), Positives = 45/59 (76%)
Frame = +2
Query: 113 NCEVFFEEKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEHARFYA 289
+ EV+F+E+F+D SWE WV S+H +FG FKL+AGKF++ D+G+QTS+ A+FY+
Sbjct: 14 SAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 72.5 bits (170), Expect = 5e-14
Identities = 30/59 (50%), Positives = 45/59 (76%)
Frame = +2
Query: 113 NCEVFFEEKFSDDSWESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEHARFYA 289
+ EV+F+E+F+D SWE WV S+H +FG FKL+AGKF++ D+G+QTS+ A+FY+
Sbjct: 14 SAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71
>Z68302-4|CAB54515.1| 521|Caenorhabditis elegans Hypothetical
protein ZK792.8 protein.
Length = 521
Score = 28.7 bits (61), Expect = 0.76
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 189 PGCSLYTQFDSHESSEN-FSSKNTSQFID 106
P C+L QF+S E +N N SQFID
Sbjct: 443 PSCALCFQFESREQFDNDMRQLNLSQFID 471
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.7 bits (61), Expect = 0.76
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 174 YTQFDSHESSENFSSKNTSQFIDEIANKLAIASTADFI 61
+T+F ++NF SKN +FID + L+ D++
Sbjct: 437 FTKFYMEVFTKNFDSKNNQKFIDNLEKCLSSGRFKDYL 474
>Z77659-6|CAB01167.1| 401|Caenorhabditis elegans Hypothetical
protein F23B12.6 protein.
Length = 401
Score = 27.1 bits (57), Expect = 2.3
Identities = 7/32 (21%), Positives = 19/32 (59%)
Frame = +1
Query: 4 CRNSARGFFDKDGACCELKNEICSAGYCQFIG 99
C++ + GF+ +G ++++ C+ C+ +G
Sbjct: 172 CKHESGGFYMHEGGEIDMRSAYCALATCEIVG 203
>AF022976-2|AAC69081.1| 146|Caenorhabditis elegans Hypothetical
protein R11G11.6 protein.
Length = 146
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 174 YTQFDS-HESSENFSSKNTSQFIDEIAN 94
YT + + +ENF SKNT+Q I ++++
Sbjct: 67 YTAYTKKQQDNENFMSKNTTQIISQLSS 94
>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical protein
F01G4.3 protein.
Length = 1266
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 213 NLNLPNSFPGCSLYTQFDSHES 148
NLNLP SFP T+FD H S
Sbjct: 1025 NLNLPQSFPARHC-TRFDEHFS 1045
>AF273806-1|AAG15155.1| 395|Caenorhabditis elegans nuclear receptor
NHR-58 protein.
Length = 395
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 170 PNLIP-MNRLRIFPQRTLHNLLTKLPIN 90
P+ P MN+ +F HN+ TK+P+N
Sbjct: 138 PSWTPHMNKGPLFKLANFHNVFTKMPVN 165
>AF022976-15|AAO26008.1| 324|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 58, isoform b protein.
Length = 324
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 170 PNLIP-MNRLRIFPQRTLHNLLTKLPIN 90
P+ P MN+ +F HN+ TK+P+N
Sbjct: 67 PSWTPHMNKGPLFKLANFHNVFTKMPVN 94
>AF022976-14|AAC69077.1| 393|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 58, isoform a protein.
Length = 393
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 170 PNLIP-MNRLRIFPQRTLHNLLTKLPIN 90
P+ P MN+ +F HN+ TK+P+N
Sbjct: 136 PSWTPHMNKGPLFKLANFHNVFTKMPVN 163
>Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical protein
F33H1.4 protein.
Length = 1385
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -1
Query: 282 NLACSDVCKPLSASASL*NFPAVNLNLPNSFPGCSLYTQFDSHESSENFSSKNTSQ 115
+L CS + S+ ++ A++ +L + PG + DSHE +E + N+ Q
Sbjct: 976 HLQCSKLNAKYSSEKAMDK--AIDRHLKRAKPGVDQHDPDDSHEDAEAICTTNSQQ 1029
>Z50863-2|CAA90737.1| 351|Caenorhabditis elegans Hypothetical
protein C14H10.4 protein.
Length = 351
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 125 FFEEKFSDDSWESNWVYS 178
FF FS SW++ W+YS
Sbjct: 273 FFHFFFSKFSWQTGWLYS 290
>Z74042-16|CAA98527.3| 512|Caenorhabditis elegans Hypothetical
protein T11F9.2b protein.
Length = 512
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 168 QFDSHESSENFSSKNTSQFIDEIANK 91
+F S + S + ++ NTSQF+D I N+
Sbjct: 260 EFRSPKLSSHHTNGNTSQFLDVINNE 285
>Z74042-15|CAD54157.1| 505|Caenorhabditis elegans Hypothetical
protein T11F9.2a protein.
Length = 505
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 168 QFDSHESSENFSSKNTSQFIDEIANK 91
+F S + S + ++ NTSQF+D I N+
Sbjct: 253 EFRSPKLSSHHTNGNTSQFLDVINNE 278
>AL117204-27|CAB55133.2| 241|Caenorhabditis elegans Hypothetical
protein Y116A8C.43 protein.
Length = 241
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -1
Query: 207 NLPNSFPGCSLYTQFDSHESSENFSSKNTSQFIDEIANKLAIASTADF 64
+LP + C+L F ES F + + F+ N L I + DF
Sbjct: 61 HLPYTVKRCALSEYFTWEESGTFFPFQKCNNFVFFGGNSLQILNNTDF 108
>AF047656-12|AAC05111.1| 168|Caenorhabditis elegans Hypothetical
protein F17E9.2 protein.
Length = 168
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 155 WESNWVYSEHPGKEFGKFKLTAGKFYNDAEADKGLQTSEHARFYAL 292
WE + + +H G F F AG FY D G +E+ FY +
Sbjct: 51 WEEDGLIDDHLGDTFLFFLSEAGAFYKIDVQDDGDGPNEN--FYRI 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,016,979
Number of Sequences: 27780
Number of extensions: 135010
Number of successful extensions: 417
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -