Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B01
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    27   1.1  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    26   2.0  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   2.6  
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...    25   2.6  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   2.6  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    25   4.5  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    24   6.0  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    24   7.9  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     24   7.9  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    24   7.9  

>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 201 VMNFQTTSYLEFPRLLLKSKERG 269
           V NF T+S+ EF  LLL SK  G
Sbjct: 591 VHNFNTSSFKEFSVLLLSSKAGG 613


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 236 STAAAQIEGAWNI--DGRSPSIWDHLIHTNPK 325
           S    ++ GA NI  +  +P +WDH+    PK
Sbjct: 636 SDVYGKVPGALNIKPEQMTPEVWDHVFRQAPK 667


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 299 PIYWVIFHLCSTLLRFEQQPWKLQIRSCLEI 207
           PI WV    CS   ++    W L+  S LE+
Sbjct: 244 PIEWVFSTWCSIFQKYLMNNWHLRSISTLEV 274


>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
           Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 339 PSLTNFGFVCIKWSHILGDLPSMFHAPSI*AAAVETPNKKL 217
           P++   G VCI   H  GD P+M+ + S   + V++  K L
Sbjct: 81  PNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKIL 121


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -3

Query: 348 ALDPSLTNFGFVCIKWSHILGDLPSMFHAPSI*AAAVETPNKKLSGNS*LDFEPPAKF 175
           A+ P +T+   V    S  L  +P+MF AP + A   E P     G +    +P A +
Sbjct: 448 AMPPGVTSSIAVPTTSSMPLQGMPTMFGAPGVSAPGTEAPGTGTPGLTTPGVDPYAAY 505


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -3

Query: 339 PSLTN-FGFVCIKWSHILGDLPSMFHA 262
           PS+T    FV + WS+ +G+L +M  A
Sbjct: 403 PSITGGIAFVALPWSNRIGELATMIIA 429


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 353 HQHWIHL*QISDLYVLNGPIY 291
           H  +IH+ Q+  LY+L  P Y
Sbjct: 152 HYFYIHIFQVLHLYLLASPTY 172


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 283 SSIYVPRSFDLSSSRGNSK*EVVWKFIT 200
           S +YVPRS   SS R +    V+ K IT
Sbjct: 354 SRLYVPRSHRRSSDRSHYSYVVIQKGIT 381


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
 Frame = +2

Query: 266 WNIDGRSPSIWDHL----IHTNPK 325
           WNID    ++WD+L    ++T P+
Sbjct: 275 WNIDELKETMWDYLNLVRVYTRPR 298


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 283 SSIYVPRSFDLSSSRGNSK*EVVWKFIT 200
           S +YVPRS   SS R +    V+ K IT
Sbjct: 354 SRLYVPRSHRRSSDRSHYSYVVIQKGIT 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,680,225
Number of Sequences: 5004
Number of extensions: 33891
Number of successful extensions: 65
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)