Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_B01
         (353 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            29   0.016
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   1.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   2.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   2.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   2.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   4.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   5.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   5.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   5.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   5.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   7.5  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    20   9.9  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    20   9.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   9.9  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    20   9.9  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    20   9.9  

>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 29.1 bits (62), Expect = 0.016
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 305 NGPIYWVIFHLCSTLL 258
           NG IYW ++HLC+ +L
Sbjct: 35  NGSIYWSMYHLCTVVL 50


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
 Frame = +1

Query: 247 CSNRRSVEHRWKITQYMGPF-NTYKSEICQRW 339
           CSN    EHRW+    M  F N  K      W
Sbjct: 374 CSNGWICEHRWRQIYNMVRFRNLVKGTKIDNW 405


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 201 VMNFQTTSYLEFPRLLLKSKE 263
           V  F T +  E+PRLL K KE
Sbjct: 396 VEGFITAAVDEWPRLLRKRKE 416


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 201 VMNFQTTSYLEFPRLLLKSKE 263
           V  F T +  E+PRLL K KE
Sbjct: 449 VEGFITAAVDEWPRLLRKRKE 469


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = -3

Query: 312 CIKWSHILGDLPSMFH 265
           C++W++   ++ S+FH
Sbjct: 12  CLRWNNYQSNMTSVFH 27


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -3

Query: 57  DSNRYSTVCTLNISINASC 1
           +  +Y  VC L    N SC
Sbjct: 600 NERKYEDVCVLKTDTNQSC 618


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = -3

Query: 54  SNRYSTVCTLNISI-NASC 1
           SN Y+T CT+  S  N +C
Sbjct: 184 SNNYTTDCTIEYSTGNFTC 202



 Score = 19.8 bits (39), Expect = 9.9
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = +1

Query: 244 CCSNRRSVEHRWKITQYMGPFN 309
           CC  R +  +  K++++  PF+
Sbjct: 349 CCQGRATAIYIDKVSRFFFPFS 370


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 336 SLTNFGFVCIKWSHI 292
           S T FGF C++++ +
Sbjct: 77  SATKFGFPCLQYTQL 91


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 57  DSNRYSTVCTLNI 19
           D+  Y T+C LNI
Sbjct: 499 DTYTYDTICQLNI 511


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 336 SLTNFGFVCIKWSHI 292
           S T FGF C++++ +
Sbjct: 77  SATKFGFPCLQYTQL 91


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 19  YIQSTHGGVPVRILVW 66
           Y+   +GG  VR L+W
Sbjct: 83  YLNQIYGGQFVRDLIW 98


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 203 NWTLNLRPNLL 171
           NW   LRPN L
Sbjct: 27  NWNTLLRPNFL 37


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 203 NWTLNLRPNLL 171
           NW   LRPN L
Sbjct: 71  NWNTLLRPNFL 81


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 178 IYYFGIFK*LVKCTIFMKH 122
           I+  GIF  +  CT+ +K+
Sbjct: 50  IFVTGIFGNITTCTVIIKN 68


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 203 NWTLNLRPNLL 171
           NW   LRPN L
Sbjct: 71  NWNTLLRPNFL 81


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 203 NWTLNLRPNLL 171
           NW   LRPN L
Sbjct: 71  NWNTLLRPNFL 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,646
Number of Sequences: 438
Number of extensions: 2368
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)