Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_A24
(382 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.25
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 28 0.43
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 0.99
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 27 1.3
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c... 25 5.3
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2... 25 5.3
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 24 7.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 24 7.0
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 24 7.0
SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces pomb... 24 7.0
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 24 9.3
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 24 9.3
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 24 9.3
SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subuni... 24 9.3
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 24 9.3
SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces... 24 9.3
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 24 9.3
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 24 9.3
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.25
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 247 SESTPLTRSRTLCLPSCSIPSSRTTITVLRRPTSTPPRTGAMSRP 381
+ S+PL + T C S SIP + + T + PT P T + S P
Sbjct: 273 TNSSPLPTTSTSCTTSTSIPPTGNSTTPV-TPTVPPTSTSSTSTP 316
Score = 29.1 bits (62), Expect = 0.25
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 247 SESTPLTRSRTLCLPSCSIPSSRTTITVLRRPTSTPPRTGAMSRP 381
+ S+PL + T C S SIP + + T + PT P T + S P
Sbjct: 327 TSSSPLPSTSTSCTTSTSIPPTGNSTTPV-TPTVPPTSTSSTSTP 370
Score = 27.5 bits (58), Expect = 0.75
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 238 TLVSESTPLTRSRTLCLPSCSIP--SSRTTITVLRRPTSTPPRTGAMSRP 381
T S S+PL + T C S SIP ++++ PT P T + S P
Sbjct: 100 TTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIP 149
Score = 27.1 bits (57), Expect = 0.99
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 247 SESTPLTRSRTLCLPSCSIPS-SRTTITVLRRPTSTPPRTGAMSRP 381
+ S+PL + T C S SIP+ ++++ PT P T + S P
Sbjct: 217 TNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIP 262
Score = 25.4 bits (53), Expect = 3.0
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 247 SESTPLTRSRTLCLPSCSIP--SSRTTITVLRRPTSTPPRTGAMSRP 381
+ S PL + T C S SIP ++++ PT P T + S P
Sbjct: 160 TNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIP 206
Score = 25.4 bits (53), Expect = 3.0
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +1
Query: 247 SESTPLTRSRTLCLPSCSIP---SSRTTITVLRRPTST 351
+ S+PL + T C S SIP +S T +T PTS+
Sbjct: 381 TSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSS 418
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 28.3 bits (60), Expect = 0.43
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 174 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPII 311
N+ S+ + Q + + IY PD Y ++A LF PI+
Sbjct: 479 NEALSYSNNAFSKSQEALFHPSMVTTIYFPDESKYGIYAPLFAPIL 524
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.1 bits (57), Expect = 0.99
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 60 VDAVTIEKLEAGFSKLQGSESKSLLKKYLTKEVFEALKNKKTSFGSTLLDCIQSGVE 230
V V E + + KL SES L KK+ ++ LK++ + +LLD I+ E
Sbjct: 555 VSKVANESISSNHEKLMESESDRLSKKWENPQLLAQLKSRFIT--GSLLDSIEGQEE 609
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 26.6 bits (56), Expect = 1.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 286 LPSCSIPSSRTTITVLRRPTSTPPRTGAMSRP 381
LPS S+P S + T+TP + G +S P
Sbjct: 139 LPSGSVPPSASVSRANSTATTTPHKAGVVSNP 170
>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 679
Score = 24.6 bits (51), Expect = 5.3
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +3
Query: 264 DAESYSV--FAELFDPIIEDYHNGFKKTDKHPAKNWG 368
DA S S+ F EL P D N K K+P+K WG
Sbjct: 22 DARSKSIAQFKELGPP---DQVNTIKVNAKNPSKEWG 55
>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 285
Score = 24.6 bits (51), Expect = 5.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 250 PTPESKFSTPDWMQSSRVEPNEVFLFLRASKTSLV 146
PTP + ++ D S+ P L + SKTSLV
Sbjct: 32 PTPTAYLNSNDGHSSAASSPGSYSLKKKRSKTSLV 66
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 24.2 bits (50), Expect = 7.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 247 SESTPLTRSRTLCLPS--CSIPSSRTTITVLRRPTSTP 354
S S+ +RSR L S +PS R ++ +LRR + P
Sbjct: 259 SYSSRASRSRQSSLSSRLSELPSKRASLEILRRENTFP 296
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 298 SIPSSRTTITVLRRPTSTPPR 360
S P+ T + LR PTS PPR
Sbjct: 126 SAPAPPTPQSELRPPTSAPPR 146
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 281 RVRLRVRGVDSDTRVQVLYT 222
+VRLRVRG DSD + + T
Sbjct: 529 QVRLRVRGDDSDVQTGYVLT 548
>SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 232
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 201 LLDCIQSGVENLDSG-VGIYAPDAESYSVFAELFDPIIEDY 320
L + + ++N D VG ++ +E+ + FDP+ ED+
Sbjct: 15 LTQYVGAEIDNYDENLVGTWSSKSETVLTGPDFFDPLDEDF 55
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 23.8 bits (49), Expect = 9.3
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 99 SKLQGSESKSLLKKYLTKEVFE--ALKNKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAE 272
S++ + L +K ++V E AL K S S + I S + N SG+G D +
Sbjct: 409 SRMGAEKRAKLAEKDRPRDVAERVALGLSKPSMSSDTM--IDSRLFNQASGLGSGFQDED 466
Query: 273 SYSVF 287
SY+V+
Sbjct: 467 SYNVY 471
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 23.8 bits (49), Expect = 9.3
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = -1
Query: 289 ANTEYDSASGA*IPTPESKFSTPDWMQSSRVEPNEVFLFL-RASKTSLVRYFFNSDFDSE 113
ANTE DS+S P FS+P R P L S L+R + DSE
Sbjct: 85 ANTEIDSSSSMLPPPSSDPFSSPLSSSLHRSSPKRPHDSLGEESPGKLLRTSVKQEPDSE 144
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 156 VFEALKNKKTSFGSTLLDCIQSGVENLD-SGVGIYAP 263
VFE + + G + +CI + +E LD S + Y P
Sbjct: 429 VFELMSTQGVKVGKSACNCIDALLEGLDKSEISGYLP 465
>SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subunit
3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 23.8 bits (49), Expect = 9.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 190 NEVFLFLRASKTSLVRYFFNSDFDSEPWSLLKPASNFSMVTA 65
++V L+ S T L R + D + EPWS L+P + + + A
Sbjct: 5 HKVILYY-VSLTILYRVTYLFDLE-EPWSTLRPYTPYLFILA 44
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 23.8 bits (49), Expect = 9.3
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +3
Query: 45 KAAAMVDAVTIEKLEAGFSK--LQGSESKSLLKKYLTKEVFEALKNKKTSFGSTLLDCIQ 218
K MV+ T+ + A + L G +S + Y TK+++E + K + + +
Sbjct: 64 KEGFMVNFATLTGIVAQADQRLLSGVKSWFIGATYKTKDIYERMSTTKEFLSPSNMSDMS 123
Query: 219 SGVENLDSGVGIYAPDAESYSVFAELFDP 305
EN D +Y P + +V + P
Sbjct: 124 FTFENFDL---VYVPGGQDPAVLELVESP 149
>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 113
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 284 HRVRLRVRGVDSDTRVQVLYT*LDAIQQGRAK 189
HR+RLR+ SD + LYT + A+ K
Sbjct: 74 HRLRLRLSRKRSDEDDKALYTYVQAVDVANPK 105
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 23.8 bits (49), Expect = 9.3
Identities = 20/87 (22%), Positives = 36/87 (41%)
Frame = +3
Query: 75 IEKLEAGFSKLQGSESKSLLKKYLTKEVFEALKNKKTSFGSTLLDCIQSGVENLDSGVGI 254
+E+L GF L + ++ +E L +K++ +TLL + ++ +D I
Sbjct: 1668 VEELARGFQTTNADLQNELADAVVKQKEYEVLYVEKSNDYNTLLLQKEKLMKQIDEFHVI 1727
Query: 255 YAPDAESYSVFAELFDPIIEDYHNGFK 335
D E +L + NGFK
Sbjct: 1728 RVQDLEEREKKDQLLFQRYQKELNGFK 1754
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 23.8 bits (49), Expect = 9.3
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +3
Query: 78 EKLEA--GFSKLQGSESKSLLKKYLTKEVFEALKN 176
EKLE G KL+ ++ + YLTK+VFEAL++
Sbjct: 877 EKLENIDGMEKLKVADYAN----YLTKKVFEALRS 907
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,602,579
Number of Sequences: 5004
Number of extensions: 31829
Number of successful extensions: 133
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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