Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_A24
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0015 - 98311-98412,98635-98707,98830-98921,99139-99230,993... 33 0.076
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 31 0.41
04_04_0437 + 25193263-25194627 28 2.2
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 28 2.2
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711... 28 2.2
03_05_0447 - 24421442-24422767 28 2.9
09_04_0612 - 18950025-18950192,18950501-18950637,18951202-189513... 27 3.8
03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759 27 3.8
06_03_1296 - 29104857-29105870 27 5.0
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278... 27 6.6
02_03_0177 - 16017650-16019599 27 6.6
09_06_0015 - 20234231-20234344,20234846-20234902,20234968-202351... 26 8.7
06_03_0152 + 17287133-17287490,17288541-17288734,17289349-172895... 26 8.7
05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595... 26 8.7
02_03_0052 - 14456925-14457176,14457277-14457437,14457843-144579... 26 8.7
02_02_0115 + 6946945-6947087,6947511-6947748 26 8.7
>02_01_0015 -
98311-98412,98635-98707,98830-98921,99139-99230,
99363-99432,99683-99781,100008-100093,100541-100655,
100853-100918,101064-101143,101226-101301,101915-102151,
102559-102590,102993-103047,103384-103498,104497-104579,
105182-105232,105740-105802,105945-106010,106144-106279,
106503-106591,106844-106964,107138-107340,107434-107820
Length = 862
Score = 33.1 bits (72), Expect = 0.076
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 195 STLLDCIQSGVENLDSGVGIYAPDAESYSVFAELFDPIIEDYHNGFK 335
S LLD + E D +++PD+ + VF+++ +P+++D G K
Sbjct: 103 SKLLDPKRGRTEVFDGFSSVFSPDSSQHDVFSQVMNPLVDDLLLGGK 149
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 30.7 bits (66), Expect = 0.41
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Frame = +3
Query: 6 RLAVDSDGCSSARKAAAMVDAVTIEKLEAGFSKLQGSESKSLLKKYLTKEVFEALKN--- 176
R A++ G + +AAA V A L KLQ S L +K L +E+ + L+
Sbjct: 347 RAALNDGGAEAPARAAAGVPAEADADLSPTNKKLQSLYSSLLKEKELIQELLQGLRGVEE 406
Query: 177 -KKTSFGSTLLDCIQSGVENLDSGVGIY-APDAESYSVFAELFDPI 308
+ S + I+S V + S + Y DAE+ + A+L P+
Sbjct: 407 CARAQAESPNRETIRSIVSTVLSHLASYDRVDAEATELRAQLQHPV 452
>04_04_0437 + 25193263-25194627
Length = 454
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 174 NKKTSFGSTLLDCIQSGVENLDSGVGIYAPDAESYSVFAELF 299
N TS GS D I+ G N+D YAP+ S+ A F
Sbjct: 365 NYFTSLGSCCWDLIKEGKLNVDRNCIPYAPNQRSHDECAAFF 406
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 250 PTPESKFSTPDWMQSSRVEPNE 185
P PE+K TPDW+QS ++ E
Sbjct: 117 PPPEAKKVTPDWLQSVQLWSQE 138
>01_06_1061 -
34169469-34169624,34170837-34170938,34171029-34171180,
34172087-34172153,34172239-34172419,34172655-34172778,
34174775-34174871,34175929-34176331,34176729-34176888,
34177412-34177486,34177714-34177892,34178224-34178303,
34178561-34179322
Length = 845
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 229 RTWTLVSESTPLTRSRTLCLPSCSIPSSRTTITVLRRPTSTPPRTGA 369
R T ++ +TP S+ + C +PSS+ T+ + RR T T +T A
Sbjct: 523 RVETDMAPATPGGSSQLVENRRCQLPSSQITVKMTRRNTPTGQKTVA 569
>03_05_0447 - 24421442-24422767
Length = 441
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 24 DGCSSARKAAAMVDAVTIEKLEAGFSKLQG 113
DGC S+ A++ A + +LEAG K G
Sbjct: 63 DGCGSSGAGDALLAAAALARLEAGLRKRTG 92
>09_04_0612 -
18950025-18950192,18950501-18950637,18951202-18951350,
18951738-18951968,18952654-18952724
Length = 251
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 261 PDAESYSVFAELFDPIIEDYHNGFKKTDKHPA 356
P + SY V +FD + D+ + F + D H A
Sbjct: 202 PYSRSYKVLWRVFDKLFTDFRDCFSRGDYHDA 233
>03_01_0426 + 3292358-3292780,3292858-3293094,3293166-3293759
Length = 417
Score = 27.5 bits (58), Expect = 3.8
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 27 GCSSARKAAAMVDAVTIEKLEAGFSKLQGSESKSLLKKY 143
G +A +AAA D V + + EAGF L SES+ K++
Sbjct: 47 GEKAAAEAAAAADGVVVGEAEAGFD-LSASESEFDQKRH 84
>06_03_1296 - 29104857-29105870
Length = 337
Score = 27.1 bits (57), Expect = 5.0
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Frame = -1
Query: 229 STPDWMQSSR---VEPNE-VFLFLRASKTSLVRYFFNSDFDSEPWSLL 98
S PDW + V NE V L KT FF D + WSLL
Sbjct: 193 SCPDWSKQDSHFLVASNEQVVAILHPCKTGSAFKFFKLDLQAMEWSLL 240
>05_01_0356 +
2785410-2785670,2785843-2785960,2786800-2786891,
2787114-2787176,2787299-2787397,2787726-2787884,
2788420-2788491,2788567-2788699,2788813-2788877,
2789016-2789091,2789236-2789337,2789524-2789716,
2790576-2790654,2792939-2793007,2793261-2793311,
2793680-2793742,2793926-2794041,2794263-2794347,
2794898-2794957,2795594-2795639,2796011-2796084,
2796350-2796400,2796474-2796674,2796747-2796791,
2797063-2797156,2797226-2797371,2797510-2797739,
2798136-2798196,2798290-2798347,2799020-2799513
Length = 1151
Score = 26.6 bits (56), Expect = 6.6
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = -2
Query: 273 TPRQGRRFRHQSPSSLHLIG----CNPAG*SQMRSFYS*GLR-KPPWLGTS 136
T R+ + HQS +L L+G + +G + R FY +R +P +LG +
Sbjct: 840 TAREAMKVMHQSAKALKLVGDVHAISSSGREKARKFYESAIRLEPGFLGAA 890
>02_03_0177 - 16017650-16019599
Length = 649
Score = 26.6 bits (56), Expect = 6.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 3 TRLAVDSDGCSSARKAAAMVDAVTIEKLEAGFSK 104
TR D++ A KAAA DAV+ L AG+ +
Sbjct: 103 TRRLADAERVLDALKAAAAADAVSHNTLVAGYCR 136
>09_06_0015 -
20234231-20234344,20234846-20234902,20234968-20235111,
20235581-20235745,20235817-20236005,20236086-20236326,
20236412-20236512,20236704-20237241,20238101-20238132,
20238677-20238760
Length = 554
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 250 ESTPLTRSRTLCLPSCSIPSSRTTITVLRRPTSTPPR 360
E PL R R+ +PS + S++ TV P+S+ P+
Sbjct: 280 EEQPLVRRRSRRIPSGNTESAQPVYTVDSPPSSSQPQ 316
>06_03_0152 +
17287133-17287490,17288541-17288734,17289349-17289557,
17289640-17289742,17290128-17290291,17290554-17290692,
17290908-17291078,17291162-17291298,17291445-17291759,
17291906-17291965,17292372-17292511,17292691-17292788,
17292875-17293387
Length = 866
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +3
Query: 87 EAGFSKLQGSESKSLLKKYLTKEVFEALKNKKTSFGSTLLDCIQSGVENLDSGVGI 254
EA KLQ + + ++ +E+FE K + G ++L+ +S + +L+ + I
Sbjct: 173 EASNGKLQSKVLEEVKEELSAEELFEKKKAQLAEIGMSMLEDPESHIRSLNDMLNI 228
>05_03_0608 +
16153992-16154960,16158959-16159168,16159252-16159512,
16160153-16160197,16160324-16160410,16160679-16160774
Length = 555
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 75 IEKLEAGFSKLQGSESKSLLKKYLTKEVFEALKNKK 182
IEKLEA SK+ G + L K +E A ++ K
Sbjct: 434 IEKLEAAASKIFGGDKSRLRKVEELRETIRATEDAK 469
>02_03_0052 -
14456925-14457176,14457277-14457437,14457843-14457914,
14458105-14458221,14458310-14458322,14458917-14458946,
14459837-14460010,14460276-14460417,14460731-14460792,
14461047-14461643
Length = 539
Score = 26.2 bits (55), Expect = 8.7
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +1
Query: 172 RIKRPHLALPCWIASNQV*RTWTLVSESTPLTRSRTLCLPSCSIPSSRTTIT 327
RI R L+ I SNQ+ +T + + T T S T S PS+ TT+T
Sbjct: 352 RINRDILSFVSCIVSNQIKQTCASIIQDTSDTSSNTKTDLSSDTPSN-TTMT 402
>02_02_0115 + 6946945-6947087,6947511-6947748
Length = 126
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +1
Query: 55 QW-WTP*PSRNWRLVSASSKARNQS 126
+W W P P+R W +V++ S R S
Sbjct: 37 RWQWRPPPARRWDIVASVSSTRQSS 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,111,005
Number of Sequences: 37544
Number of extensions: 230872
Number of successful extensions: 875
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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